Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11m15
         (718 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68159-7|CAA92286.1|  604|Caenorhabditis elegans Hypothetical pr...    32   0.36 
AC024791-2|AAK95891.1|  604|Caenorhabditis elegans Temporarily a...    25   1.8  
U20861-11|AAA62291.2| 1714|Caenorhabditis elegans Hypothetical p...    29   3.3  
Z66496-1|CAA91282.1|  404|Caenorhabditis elegans Hypothetical pr...    29   4.4  
U13875-11|AAA21158.1| 1193|Caenorhabditis elegans Rna polymerase...    29   4.4  
U10333-1|AAA50224.1|  859|Caenorhabditis elegans RNA polymerase ...    29   4.4  

>Z68159-7|CAA92286.1|  604|Caenorhabditis elegans Hypothetical
           protein C33D9.8 protein.
          Length = 604

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 7/81 (8%)
 Frame = +1

Query: 178 FSDDEETEINIHQELLKK----PIREQITWNTHYLQPER---EDEKTLIKKADDLTERKV 336
           FS++E   I I   L +K    P   QIT  T  L P+    E E+TLI+K  + ++   
Sbjct: 357 FSENEHLRIIISDLLDQKDEWQPRNTQITQVTQ-LNPKLIFGESEQTLIEKVKNNSKAVA 415

Query: 337 LLTVELTNKLKLTKKDSQRIL 399
            L  +L N+L  TK   +RIL
Sbjct: 416 SLNAQLKNELSYTKAVHKRIL 436


>AC024791-2|AAK95891.1|  604|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 63 protein.
          Length = 604

 Score = 25.4 bits (53), Expect(2) = 1.8
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = +1

Query: 160 NSFRFDFSDDEETE 201
           N+ +F+FSDDEE+E
Sbjct: 269 NAAKFEFSDDEESE 282



 Score = 23.0 bits (47), Expect(2) = 1.8
 Identities = 7/23 (30%), Positives = 16/23 (69%)
 Frame = +1

Query: 181 SDDEETEINIHQELLKKPIREQI 249
           +D+E+ E+     L++KP++ +I
Sbjct: 300 TDEEDEEVENSSNLIRKPLKMEI 322


>U20861-11|AAA62291.2| 1714|Caenorhabditis elegans Hypothetical
            protein C28H8.3 protein.
          Length = 1714

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/52 (23%), Positives = 27/52 (51%)
 Frame = +1

Query: 175  DFSDDEETEINIHQELLKKPIREQITWNTHYLQPEREDEKTLIKKADDLTER 330
            ++   +E +IN   ++LK+P+  Q+++       E+     ++   DDL E+
Sbjct: 1090 EWLSSDEQKINSILKILKEPVNTQLSYRARPFNKEKIANDYIVTLVDDLKEK 1141


>Z66496-1|CAA91282.1|  404|Caenorhabditis elegans Hypothetical
           protein E04D5.2 protein.
          Length = 404

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +3

Query: 432 NPIYFLLKRSKNYFRLSSIHMSLEALELFQKNYL-QSMERLPS 557
           N IY +L    +Y   + +H+ L  LE F  +YL +S +R+ S
Sbjct: 310 NAIYTMLAIVTSYLVCNGVHLFLTILERFDPSYLYESTDRMQS 352


>U13875-11|AAA21158.1| 1193|Caenorhabditis elegans Rna polymerase ii
            (b) subunit protein2 protein.
          Length = 1193

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 10/97 (10%)
 Frame = +1

Query: 154  FINSFRFDFSDDEETEINIHQELLKKPIREQITWNTHYLQPEREDEKTLIK-----KADD 318
            F + F   + D+E    N ++EL++KP RE+ +   H L  ++ DE  +I        DD
Sbjct: 812  FRSVFYRSYRDNEANLDNANEELIEKPTREKCSGMRHSLY-DKLDEDGIISPGMRVSGDD 870

Query: 319  LTERKVLLTVELTNKL-----KLTKKDSQRIL*VHET 414
            +   K +   ++ + L     K  K+D+   L   ET
Sbjct: 871  VIIGKTVALPDIDDDLDASGKKYPKRDASTFLRSSET 907


>U10333-1|AAA50224.1|  859|Caenorhabditis elegans RNA polymerase II,
           second largestsubunit protein.
          Length = 859

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 10/97 (10%)
 Frame = +1

Query: 154 FINSFRFDFSDDEETEINIHQELLKKPIREQITWNTHYLQPEREDEKTLIK-----KADD 318
           F + F   + D+E    N ++EL++KP RE+ +   H L  ++ DE  +I        DD
Sbjct: 613 FRSVFYRSYRDNEANLDNANEELIEKPTREKCSGMRHSLY-DKLDEDGIISPGMRVSGDD 671

Query: 319 LTERKVLLTVELTNKL-----KLTKKDSQRIL*VHET 414
           +   K +   ++ + L     K  K+D+   L   ET
Sbjct: 672 VIIGKTVALPDIDDDLDASGKKYPKRDASTFLRSSET 708


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,545,158
Number of Sequences: 27780
Number of extensions: 276476
Number of successful extensions: 827
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)