Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11m09
         (744 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr 2...    28   1.6  
SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr 1|...    27   2.1  
SPBC146.04 |||sulfhydryl oxidase |Schizosaccharomyces pombe|chr ...    27   2.8  

>SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 683

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -2

Query: 728 YLRLHIRHWDKW-SDSYGREIALEMSFKLDNS*IF 627
           Y  L +RHWD+W + S      +E+  K +NS  F
Sbjct: 162 YDHLFVRHWDRWNTGSRNTLYFIELDKKTENSNYF 196


>SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 578

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -1

Query: 597 KCTLTIYYINFNNEATKTIDLNGVHMKRSTLSIG 496
           KC   I+Y++       T+  N  H++R T ++G
Sbjct: 136 KCDKVIFYVHGGAHYLSTVRTNAYHIQRHTAALG 169


>SPBC146.04 |||sulfhydryl oxidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 192

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = +3

Query: 324 DLQAN*FIKLQRTV-SNYEPSPILDQR--LLKYLLSIYQLCPLVEICIDIHFII 476
           +L  N + KL  TV SNY   P LD+R  L  YL S     P  E  +++  I+
Sbjct: 67  NLMVNAYWKLIHTVVSNYPNRPTLDERDILRHYLFSSAITMPCGEYSVELQKIL 120


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,843,568
Number of Sequences: 5004
Number of extensions: 58019
Number of successful extensions: 135
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)