Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11m06
         (676 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    26   0.29 
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    21   8.1  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   8.1  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 26.2 bits (55), Expect = 0.29
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +3

Query: 486 ISGYIDYAHRLVSENWAQFFRSKKMLWPRDKDLGYYHWRHG 608
           + G +D+ +   +E+ A         WPR K+LG     HG
Sbjct: 118 LGGDLDWKYYTTNESHACLSTGGSCYWPRGKNLGGTTLHHG 158


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = -2

Query: 177 PPKSRMAIAYDPLPLPGGIRSFFQPSP 97
           PP  R+    +P   PG  R  + P P
Sbjct: 55  PPHPRLRREAEPKAEPGNNRPIYIPQP 81


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 464 LHKRGLRNIRLHRLRTSLGLGELGSVL 544
           LH RG+R  R+  +  SL L +L  ++
Sbjct: 299 LHHRGVRGTRVPGIVRSLVLDKLARIV 325


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,580
Number of Sequences: 438
Number of extensions: 4444
Number of successful extensions: 20
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)