Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11m04
         (331 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase Ubp11|Schizo...    27   0.97 
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   1.3  
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    25   3.9  
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi...    24   6.8  
SPCC1739.02c |mrpl22||mitochondrial ribosomal protein subunit L2...    23   9.0  
SPCC417.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    23   9.0  

>SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase
           Ubp11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 350

 Score = 26.6 bits (56), Expect = 0.97
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +1

Query: 37  AFSFLQNVRQTMELRKHDCRSPTLLRKFPSESLFVG 144
           A  FLQ++ +T+EL+K      + +  FP +S F+G
Sbjct: 131 AQEFLQHLVETLELQKPHTYKWSKVLSFPVDSPFIG 166


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 26.2 bits (55), Expect = 1.3
 Identities = 14/57 (24%), Positives = 24/57 (42%)
 Frame = +1

Query: 109 LRKFPSESLFVGGNTKINSATGSKDYHIIY*QSYFYE*MKVYKNYK*NELYLHLLHC 279
           LR   S  + +GG       T  K +  +  Q  F+E  K +  ++  ++YL    C
Sbjct: 512 LRTCKSRCIEIGGEQFSGFLTNIKPFEAVTFQKLFFEVGKGFSYFRPEQVYLETFFC 568


>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 24.6 bits (51), Expect = 3.9
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 89  TAEAPLCCENSQVKVCS 139
           T+E P CC N +  VC+
Sbjct: 281 TSEKPSCCSNGKSTVCA 297


>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
           spliced|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -1

Query: 304 IEVMFEISNSVINANTVRFIYNFYRLSFIRKNN 206
           I+V  E  N++ N NT+  +Y    L+ +RK +
Sbjct: 24  IDVFDEFLNAIGNENTITPVYADSSLTHLRKKS 56


>SPCC1739.02c |mrpl22||mitochondrial ribosomal protein subunit
           L22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 249

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 292 FEISNSVINANTVRFIYNFYRLSFIRK 212
           F + +S I  N+  + Y F  LSF+R+
Sbjct: 14  FLVPSSTIGLNSKTYHYKFPLLSFVRE 40


>SPCC417.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 100

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
 Frame = -1

Query: 310 HFIEVMFEISNSVINANTVRFIYNFYRLSFIRKNNSVN------KLYGSLCFRLHC*F*C 149
           HFI    ++++S      +   +NF R    ++N S++      K      FRL C +  
Sbjct: 14  HFIISFMKMNDSYTPYTYIVSFHNFVRFPIKQRNTSIHHAPNKRKRKDEAPFRL-CIYTL 72

Query: 148 YHRRTNFHLGI 116
           +H  T F  G+
Sbjct: 73  FHAHTCFSCGL 83


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,215,052
Number of Sequences: 5004
Number of extensions: 21742
Number of successful extensions: 57
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)