Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11m04
         (331 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   2.2  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   2.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   3.9  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   3.9  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    21   5.1  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    21   5.1  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    21   5.1  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    20   6.7  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    20   6.7  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    20   6.7  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    20   8.9  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 2.2
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = -1

Query: 82  CVTPWFVARFVK 47
           CV P FVA FVK
Sbjct: 124 CVVPSFVADFVK 135


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 2.9
 Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
 Frame = +2

Query: 32  LKLSAFYKTCDKPWS--YANMTAE--APLCCENSQVKVCSSVV 148
           L++   ++TC  PW+  Y     E    LC    +  +CS+ +
Sbjct: 130 LRIDLPWRTCGNPWNTRYCLTPTERLEALCWTQDEDVICSTPI 172


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.0 bits (42), Expect = 3.9
 Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
 Frame = +2

Query: 32  LKLSAFYKTCDKPWS--YANMTAE--APLCCENSQVKVCSSVV 148
           L++   ++TC  PW+  Y     E    LC    +  +CS+ +
Sbjct: 183 LRIDLPWRTCGNPWNTRYCLTPTERLEALCWTQDEDIICSTPI 225


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.0 bits (42), Expect = 3.9
 Identities = 9/28 (32%), Positives = 12/28 (42%)
 Frame = -1

Query: 262 NTVRFIYNFYRLSFIRKNNSVNKLYGSL 179
           NT+  IY+   L     N    +LY  L
Sbjct: 14  NTLHIIYSVAGLKIFEANPDTKRLYDDL 41


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 20.6 bits (41), Expect = 5.1
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = -1

Query: 118 IFAAKWGFGSHVC 80
           +   KW FG H+C
Sbjct: 97  LLLGKWIFGIHLC 109


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 20.6 bits (41), Expect = 5.1
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = -1

Query: 118 IFAAKWGFGSHVC 80
           +   KW FG H+C
Sbjct: 97  LLLGKWIFGIHLC 109


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 20.6 bits (41), Expect = 5.1
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = -1

Query: 118 IFAAKWGFGSHVC 80
           +   KW FG H+C
Sbjct: 97  LLLGKWIFGIHLC 109


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
          protein.
          Length = 620

 Score = 20.2 bits (40), Expect = 6.7
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 23 VNELKLSAFYKTCDK 67
          +NELK  A YK  D+
Sbjct: 41 LNELKSGAVYKVVDQ 55


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 20.2 bits (40), Expect = 6.7
 Identities = 5/10 (50%), Positives = 9/10 (90%)
 Frame = -3

Query: 74  SMVCRTFCKK 45
           S++C+ FCK+
Sbjct: 75  SIICKCFCKR 84


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 20.2 bits (40), Expect = 6.7
 Identities = 5/10 (50%), Positives = 9/10 (90%)
 Frame = -3

Query: 74  SMVCRTFCKK 45
           S++C+ FCK+
Sbjct: 523 SIICKCFCKR 532


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -2

Query: 153 SVTTDEQTFTWE 118
           S TTDE  F W+
Sbjct: 185 SHTTDEMIFQWD 196


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,736
Number of Sequences: 438
Number of extensions: 1378
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7342137
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)