Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11m02
(679 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 56 5e-09
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 49 5e-07
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 46 4e-06
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 44 2e-05
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 42 1e-04
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 41 1e-04
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 37 0.002
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 37 0.003
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 36 0.005
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 35 0.009
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 35 0.009
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 35 0.012
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 35 0.012
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 33 0.029
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 32 0.066
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 32 0.066
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar... 30 0.35
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 29 0.47
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 29 0.82
SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr... 28 1.1
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 28 1.1
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 28 1.4
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 27 2.5
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr... 26 4.4
SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase |Schizo... 26 4.4
SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyce... 26 5.8
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 26 5.8
SPBC359.06 |mug14||adducin|Schizosaccharomyces pombe|chr 2|||Manual 25 7.6
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 25 7.6
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 56.0 bits (129), Expect = 5e-09
Identities = 23/62 (37%), Positives = 41/62 (66%), Gaps = 1/62 (1%)
Frame = +1
Query: 466 GLPWKSTEESIKQYFEQFGEVVMVQLKKDK-SGCFKGFGFIRFATYASQMRALAQRHNID 642
GL W++T++S++ YFEQFGEV+ + +D +G +GFGF+ F +++ H++D
Sbjct: 169 GLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSKEHHLD 228
Query: 643 GR 648
G+
Sbjct: 229 GK 230
Score = 41.9 bits (94), Expect = 8e-05
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Frame = +1
Query: 466 GLPWKSTEESIKQYFEQFGEVVMVQLKKDK-SGCFKGFGFIRFATYASQMRALAQRH-NI 639
G+P TEE + +F QFG V+ L DK +G +GFGF+ + ++ ++Q + I
Sbjct: 253 GVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQPYITI 312
Query: 640 DGRWVXVR 663
G+ V V+
Sbjct: 313 HGKPVEVK 320
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 49.2 bits (112), Expect = 5e-07
Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 3/107 (2%)
Frame = +1
Query: 367 ENKRKMEDVSTDNSAAKTKRLEKKLTCSDLICLGLPWKSTEESIKQYFEQFGEVVMVQLK 546
E KRK E S + A TK + + L W ++ + Q FE++G +V ++
Sbjct: 236 EKKRKAEPASEERPAKITKPSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVI 295
Query: 547 KD-KSGCFKGFGFIRFATYASQMRALAQR--HNIDGRWVXVRIPNSK 678
D +SG KG+G++ F T + A+A IDGR V + + N +
Sbjct: 296 MDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLSNPR 342
Score = 36.7 bits (81), Expect = 0.003
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Frame = +1
Query: 448 SDLICLG-LPWKSTEESIKQYFEQFGEVVMVQLKKD-KSGCFKGFGFIRFATYASQMRAL 621
SD + +G L + +TE+ + F G++ ++L D +SG KGFG++ F+ S + +
Sbjct: 365 SDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCV 424
Query: 622 AQR-HNIDGR 648
H I GR
Sbjct: 425 EMNGHFIAGR 434
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 46.4 bits (105), Expect = 4e-06
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Frame = +1
Query: 484 TEESIKQYFEQFGEVVMVQLKKDKSGCFKGFGFIRFATYASQMRALAQRHNID--GRWVX 657
T+E +K FE FG++ V L++D KGFG+I++ S AL + + D GR +
Sbjct: 352 TDEDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKMNGFDLAGRNMR 411
Query: 658 VRIPNSK 678
V + N K
Sbjct: 412 VCLGNDK 418
Score = 29.9 bits (64), Expect = 0.35
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +1
Query: 484 TEESIKQYFEQFGEVVMVQLKKDK-SGCFKGFGFIRFATYASQMRALA 624
T + +FEQ G V Q+ +DK SG KG ++ F S A+A
Sbjct: 252 TSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAIA 299
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 44.0 bits (99), Expect = 2e-05
Identities = 26/81 (32%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Frame = +1
Query: 403 NSAAKTKRLE--KKLTCSDLICLGLPWKSTEESIKQYFEQFGEVVMVQLKK-DKSGCFKG 573
N+ +KT ++ KK S L L +++T+ +K++F Q G++ V+L + +G KG
Sbjct: 211 NTLSKTASIQSSKKEPSSILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKG 270
Query: 574 FGFIRFATYASQMRALAQRHN 636
FGF+ F + M+A+ HN
Sbjct: 271 FGFVDFPDIDTCMKAMELGHN 291
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 41.5 bits (93), Expect = 1e-04
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +1
Query: 445 CSDLICLG-LPWKSTEESIKQYFEQFGEVVMVQLKKDKSGCFKGFGFIRF 591
CSD I +G LPW +++ ++ F G V+ ++ + +G KGFG ++F
Sbjct: 278 CSDCIYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQF 327
Score = 39.5 bits (88), Expect = 4e-04
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = +1
Query: 469 LPWKSTEESIKQYFEQFGEVVMVQLKKDKSGCFKGFGFIRFATYASQMRALAQRHNID-- 642
LP+ + +K F Q G V+ ++ ++ G +G G + ++ M A+ HN D
Sbjct: 190 LPYNVRWQDLKDLFRQAGSVIRADIQMNQEGRSRGIGIVVMSSMKEAMHAIQMLHNTDFM 249
Query: 643 GRWVXVRI 666
GR + VR+
Sbjct: 250 GRTLEVRL 257
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 41.1 bits (92), Expect = 1e-04
Identities = 22/77 (28%), Positives = 39/77 (50%)
Frame = +1
Query: 391 VSTDNSAAKTKRLEKKLTCSDLICLGLPWKSTEESIKQYFEQFGEVVMVQLKKDKSGCFK 570
VS +K + L+ T ++ L + TE+ F QFGE+ + L KD++ +
Sbjct: 244 VSRRERQSKVEALKANFT--NVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPR 301
Query: 571 GFGFIRFATYASQMRAL 621
GFGF+ +A + +A+
Sbjct: 302 GFGFVNYANHECAQKAV 318
Score = 40.7 bits (91), Expect = 2e-04
Identities = 26/98 (26%), Positives = 48/98 (48%)
Frame = +1
Query: 334 GKNLYVCVFPKENKRKMEDVSTDNSAAKTKRLEKKLTCSDLICLGLPWKSTEESIKQYFE 513
GK LYV K+++R+ E++ K +++ K + L L + +E +K F
Sbjct: 328 GKKLYVGRAQKKHERE-EELRKRYEQMKLEKMNKYQGVN-LFIKNLQDEVDDERLKAEFS 385
Query: 514 QFGEVVMVQLKKDKSGCFKGFGFIRFATYASQMRALAQ 627
FG + ++ D+ G KGFGF+ + T +A+ +
Sbjct: 386 AFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTE 423
Score = 29.9 bits (64), Expect = 0.35
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = +1
Query: 490 ESIKQYFEQFGEVVMVQLKKDKSGCFKGFGFIRFATYASQMRAL 621
+++ F FG+++ ++ D+ G KG+GF+ F + S A+
Sbjct: 182 KALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAI 225
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 37.1 bits (82), Expect = 0.002
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Frame = +1
Query: 454 LICLGLPWKSTEESIKQYFEQFGEVVMVQLKKD-KSGCFKGFGFIRFATYASQMRALAQR 630
+I G+ ++TEE ++ F FG V + L D ++G KG+ I +AT +A+ ++
Sbjct: 12 IIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAVDEK 71
Query: 631 H 633
+
Sbjct: 72 N 72
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 36.7 bits (81), Expect = 0.003
Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Frame = +1
Query: 379 KMEDVSTDNSAAKTKRLEKKLTCSDLICLGLPWKSTEESIKQYFEQFGEVVMVQLKKDKS 558
K+ D +A K+ K + ++ LP+++T++ ++ +G++ V++ K
Sbjct: 698 KLSHQGVDAAAEVRKQDSSKPKGTKILIKNLPFEATKKDVQSLLGAYGQLRSVRVPKKFD 757
Query: 559 GCFKGFGFIRFAT---YASQMRALAQRH 633
+GF F F T A+ MRAL H
Sbjct: 758 RSARGFAFAEFVTAREAANAMRALKNTH 785
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 35.9 bits (79), Expect = 0.005
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 3/98 (3%)
Frame = +1
Query: 376 RKMEDVSTDNSAAKTKRLEKKLTCSDLICLGLPWKSTE-ESIKQYFEQFGEVVMVQLKKD 552
RK +V TD + A K + + LI LPW + + ++ +F +FG+V +++
Sbjct: 84 RKRSEVDTDQNKAVKKTIRQD-NRPRLIIRNLPWSIKKPQHLEPHFSKFGKVREIKIPTK 142
Query: 553 KSGCFKGFGFIRFATYASQMRALAQRH--NIDGRWVXV 660
G GF F+ + A+ + IDGR + V
Sbjct: 143 GGGRMCGFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAV 180
Score = 28.7 bits (61), Expect = 0.82
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +1
Query: 388 DVSTDNSAAKTKRLEKKLTCSDLICLGLPWKSTEESIKQYFEQFGEVVMVQLKKD-KSGC 564
D S+D ++ + + + + L ++ TE+ + +F QFG + +L KD +
Sbjct: 257 DSSSDKNSINHEIRDNEGLEDTVFVRNLLFECTEQELYNHFRQFGPLAYAKLVKDPATDR 316
Query: 565 FKGFGFIRF 591
G GFI+F
Sbjct: 317 SLGRGFIKF 325
Score = 25.8 bits (54), Expect = 5.8
Identities = 14/43 (32%), Positives = 26/43 (60%)
Frame = +1
Query: 535 VQLKKDKSGCFKGFGFIRFATYASQMRALAQRHNIDGRWVXVR 663
V+ +K +G KGFGF++F ++ + AL ++GR + V+
Sbjct: 528 VETEKAGAGRSKGFGFMQFISHKYALMALRW---LNGREITVK 567
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 35.1 bits (77), Expect = 0.009
Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 6/98 (6%)
Frame = +1
Query: 364 KENKRKMEDVSTD-NSAAKTKRLEKKLTCSDLICL--GLPWKSTEESIKQYFEQFGEVVM 534
+ N + VS + K+KR + K +I LP S+ E+++ +F++ G+V
Sbjct: 61 QSNDKDKHSVSNPPHKTLKSKRQKGKNNDRKVILFVGNLPKDSSVETLQLHFKRAGQVPS 120
Query: 535 VQLKKDK-SGCFKGFGFIRFATYASQM--RALAQRHNI 639
V++ DK SG KG+ F+ F + + +AL H I
Sbjct: 121 VRIPTDKTSGRQKGYAFVEFINPKTDVISKALKFHHTI 158
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 35.1 bits (77), Expect = 0.009
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +1
Query: 487 EESIKQYFEQFGEVVMVQLKKDK-SGCFKGFGFIRFATYASQMRALAQRHNIDG 645
EE ++ F +FG + V L KDK +G KGF F+ +Y + A+ R +DG
Sbjct: 215 EEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFV---SYYDRDCAIKARDRLDG 265
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 34.7 bits (76), Expect = 0.012
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Frame = +1
Query: 412 AKTKRLEKKLTCSDLICLG-LPWKSTEESIKQYFEQFGEVVMVQLKKD-KSGCFKGFGFI 585
++ K L+KK ++ +G LP E+ ++ YF QFG V+ +++ ++ K+G K + FI
Sbjct: 95 SENKNLQKK---KGVLYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFI 151
Query: 586 RF 591
F
Sbjct: 152 EF 153
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 34.7 bits (76), Expect = 0.012
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +1
Query: 469 LPWKSTEESIKQYFEQFGEVVMVQLKKDK-SGCFKGFGFIRFATYASQMRALAQRHNI 639
L + E+ I F +FGE V + L +DK +G KGF F+++ S + A+ N+
Sbjct: 38 LDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAVDNMTNV 95
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 33.5 bits (73), Expect = 0.029
Identities = 13/49 (26%), Positives = 29/49 (59%)
Frame = +1
Query: 487 EESIKQYFEQFGEVVMVQLKKDKSGCFKGFGFIRFATYASQMRALAQRH 633
+ES+ Q F ++ +V ++ +D+ G +GFGF+ F ++A +++
Sbjct: 43 DESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKDSDQFLKAWREKN 91
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 32.3 bits (70), Expect = 0.066
Identities = 16/58 (27%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Frame = +1
Query: 493 SIKQYFEQFGEVVMVQLKKDKSGCFKGFGFIRFATYASQMRALAQRHN--IDGRWVXV 660
++K YF+Q+G ++ V++ KD + + F++F +AL++ N +DGR + +
Sbjct: 98 TVKDYFQQWGPLLHVKVLKD--WLQRPYSFVQFQNTDDASKALSEAQNTILDGRHIRI 153
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 32.3 bits (70), Expect = 0.066
Identities = 20/54 (37%), Positives = 29/54 (53%)
Frame = +1
Query: 466 GLPWKSTEESIKQYFEQFGEVVMVQLKKDKSGCFKGFGFIRFATYASQMRALAQ 627
GL +EE +K F+ FGE+V V++ K GC GF++F S A+ Q
Sbjct: 309 GLSKFVSEEELKYLFQNFGEIVYVKIPPGK-GC----GFVQFVNRQSAEIAINQ 357
>SPAC823.11 |||sphingosine-1-phosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 29.9 bits (64), Expect = 0.35
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 247 LKYRHPDSKSVRGIRLSDGKLHPPSEVG 330
L Y P S+S +GIR + G H P +G
Sbjct: 335 LSYLEPKSQSEKGIRAATGSNHSPGNIG 362
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 29.5 bits (63), Expect = 0.47
Identities = 16/46 (34%), Positives = 27/46 (58%)
Frame = +1
Query: 484 TEESIKQYFEQFGEVVMVQLKKDKSGCFKGFGFIRFATYASQMRAL 621
T E +K+ FE+FGE+ V ++K+ C F+ F + AS + A+
Sbjct: 426 TIERLKEDFEEFGEIEYVNFFREKN-C----AFVNFTSLASAINAI 466
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 28.7 bits (61), Expect = 0.82
Identities = 13/51 (25%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +1
Query: 487 EESIKQYFEQFGEVVMV-QLKKDKSGCFKGFGFIRFATYASQMRALAQRHN 636
E + F G++V Q+ +D++G KG+GF+ + ++ + A+ +N
Sbjct: 112 ERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAMNN 162
>SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 431
Score = 28.3 bits (60), Expect = 1.1
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = +1
Query: 388 DVSTDNSAAKTKRLEKKLTCSDLICLGLPWKSTEESIKQYFEQFGEVVMVQLKKDKS 558
DV+++ S++ L L + W TEE +K+ E FGE+V V K+
Sbjct: 337 DVASEWSSSDMASLNDSLYSHPSVSKQSTW--TEEELKEELESFGELVPVPFSSTKA 391
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 28.3 bits (60), Expect = 1.1
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +1
Query: 487 EESIKQYFEQFGEVVMVQLKKDK-SGCFKGFGFIRFATYASQMRALAQRHNI 639
+E ++ F +FG+++ Q+ +DK +G + FI F S +A + N+
Sbjct: 257 DEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKMQNV 308
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 27.9 bits (59), Expect = 1.4
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = +1
Query: 382 MEDVSTDNSAAKTKRLEKKLTCSDLICLGLPWKSTEESIKQYFEQFGEVVMVQLKKD-KS 558
M +S DN K +E ++ GLP +++E++ Y +FG+V + D ++
Sbjct: 277 MFPMSHDN---KKSNMESTSRTRNVYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMET 333
Query: 559 GCFKGFGFIRF 591
KG+GF F
Sbjct: 334 NLCKGYGFACF 344
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 27.1 bits (57), Expect = 2.5
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +1
Query: 487 EESIKQYFEQFGEVVMVQLK-KDKSGCFKGFGFIRFATYASQMRA 618
+ ++ F FG ++ L SG KG+GF+ F + +RA
Sbjct: 397 KSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEAAVRA 441
>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 585
Score = 26.2 bits (55), Expect = 4.4
Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Frame = -3
Query: 494 DSSVDFHGNPKQIKSEQVNFFSKRLVLAAELS---VETSSILRLFSFGKTQTYKFLPQPT 324
++ + G P+Q + + L ++ ELS +TSSI L + TY +LP P
Sbjct: 378 EAKLSMIGLPRQ-PNRSYEIMLQHLKVSMELSNPCAKTSSIF-LCLWHLVLTYYYLPDPL 435
Query: 323 SLGGCNFPSLRRIPRTDLESGCRYF 249
L R I TDLES YF
Sbjct: 436 FL--------RSITLTDLESATSYF 452
>SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 944
Score = 26.2 bits (55), Expect = 4.4
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +1
Query: 124 LFEYVKVSEDEDENNAV--EIPCEVDGTLLLSTLVAQFPGT 240
L E VSE+E +++++ ++P E+D T S + PGT
Sbjct: 46 LDESAIVSEEESDDDSLLSDLPEEIDSTNAQSNIATPSPGT 86
>SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 851
Score = 25.8 bits (54), Expect = 5.8
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -1
Query: 415 WQPNYLSRRPPFYVYFLSEKRKRISFYP 332
W+ RP F L E +KR+SFYP
Sbjct: 138 WRSKAAKSRPSFDNILL-ENKKRVSFYP 164
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 25.8 bits (54), Expect = 5.8
Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 6/100 (6%)
Frame = +1
Query: 364 KENKRKMEDVSTDNSAAKTKRLEKKLTCSDLICLGLPWKSTEESIK-----QYFEQFGEV 528
+E +RK ++S A + ++K L + + P + EE+I +YF Q+G++
Sbjct: 92 REKERKEVELSNRKHLANIRVVQKNLAYVNGLS---PKVANEENINVLKGPEYFGQYGKI 148
Query: 529 VMVQLKKDKSGCFKGFGFIR-FATYASQMRALAQRHNIDG 645
+ + + K K+ G + + TY + A IDG
Sbjct: 149 IKIAINK-KAAANSANGHVGVYITYQRKEDAARAIAAIDG 187
>SPBC359.06 |mug14||adducin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 257
Score = 25.4 bits (53), Expect = 7.6
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 94 MGSKSGYNEDLFEYVKVSEDEDENNAVEIPCEVDGTLL 207
M ++GYNE +V V + DEN P EV +L+
Sbjct: 30 MFGRNGYNEGTAGHVTVRDPIDENTFWINPLEVPFSLM 67
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 25.4 bits (53), Expect = 7.6
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = +1
Query: 469 LPWKSTEESIKQYFEQFGEVVMVQLKKD 552
LP T + ++ YF FGE++ Q+ +
Sbjct: 183 LPENITTQELRSYFLHFGEILYTQVNNN 210
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,649,750
Number of Sequences: 5004
Number of extensions: 54046
Number of successful extensions: 188
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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