Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11m01
         (775 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz...    39   7e-04
SPAC3F10.12c |||transcription factor |Schizosaccharomyces pombe|...    37   0.004
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    33   0.034
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    32   0.10 
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre...    31   0.18 
SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|...    29   0.98 
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    28   1.7  
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    27   2.3  
SPAC8C9.17c |spc34||DASH complex subunit Spc34|Schizosaccharomyc...    27   3.9  
SPBC609.04 |caf5||spermine family transmembrane transporter Caf5...    26   5.2  
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    26   5.2  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    26   5.2  
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb...    26   6.9  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   9.1  
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    25   9.1  
SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|c...    25   9.1  
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.1  

>SPBC354.05c |sre2||membrane-tethered transcription factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 793

 Score = 39.1 bits (87), Expect = 7e-04
 Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
 Frame = +3

Query: 237 SQAEKRAHHNALERKRRDHIKDSFTSLRESVPALQNEKVASRAQILKKAAEYIQFMRRKN 416
           S   KR+ HN +E++ R ++ D    LR++VP L++   ++ A  LK    Y+   R+ N
Sbjct: 423 SPLSKRSAHNMIEKRYRSNLNDKIAELRDAVPTLRSGYNSTTADELK--GTYVPLSRKLN 480

Query: 417 -----NSHQQDIEDLKRQNNILEAQIRALEK 494
                +   + I+ L+ +N  L  + + L+K
Sbjct: 481 KATILSKATEYIKSLQSKNKKLIEENKILQK 511


>SPAC3F10.12c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 201

 Score = 36.7 bits (81), Expect = 0.004
 Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 7/83 (8%)
 Frame = +3

Query: 249 KRAHHNALERKRRDHIKDSFTSLRESVPALQNEK---VASRAQILKKAAEYIQFMRRKNN 419
           KR  H  +ER+RR+ I +    L   VP  +  K   +   AQ ++   E  +  R K+N
Sbjct: 89  KRLSHKEVERRRREAISEGIKELANIVPGCEKNKGSILQRTAQYIRSLKEMEEMCREKSN 148

Query: 420 SHQ----QDIEDLKRQNNILEAQ 476
             +      I++L R+N  L+++
Sbjct: 149 LEKLVADHTIQELARENARLKSE 171


>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1052

 Score = 33.5 bits (73), Expect = 0.034
 Identities = 18/71 (25%), Positives = 36/71 (50%)
 Frame = +3

Query: 279 KRRDHIKDSFTSLRESVPALQNEKVASRAQILKKAAEYIQFMRRKNNSHQQDIEDLKRQN 458
           K   + KD   +L + + AL+ E    +A   +       +  ++NN+ Q  +E L R+N
Sbjct: 486 KAHHYAKDQVRNLNDEMVALRAELEVVKAMNSQPDDPDSDYAIKQNNALQNRLEALTREN 545

Query: 459 NILEAQIRALE 491
            +L++++  LE
Sbjct: 546 ELLQSRVTTLE 556


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 31.9 bits (69), Expect = 0.10
 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
 Frame = +3

Query: 309 TSLRESVPALQNEKVASRAQILKKAAEYIQFMRRKNNSHQQD---IEDLKRQNNILEAQI 479
           TSL + V  L + K+ +R+  L+    YI + R  N+ +Q+D   IE   ++   LE QI
Sbjct: 2   TSLNDIVNKLSSSKIKTRSDALQNLRSYIIYSRNGNSLNQEDALIIEKAIKRAFELEWQI 61

Query: 480 RA 485
            A
Sbjct: 62  SA 63


>SPBC19C2.09 |sre1||sterol regulatory element binding protein
           Sre1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 900

 Score = 31.1 bits (67), Expect = 0.18
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +3

Query: 249 KRAHHNALERKRRDHIKDSFTSLRESVPALQ 341
           K+  HN +E++ R ++ D    LR++VP+L+
Sbjct: 261 KKTAHNMIEKRYRTNLNDRICELRDAVPSLR 291


>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 250

 Score = 28.7 bits (61), Expect = 0.98
 Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = +3

Query: 357 SRAQILKKAAEYIQFMRRKNNSHQQDIEDLKRQNNILEA-QIRALEKARTTGNYVDAHE 530
           SR QI+  AAE     ++K     +  E  + +    E  QI    KAR  GNY   HE
Sbjct: 29  SREQIVAAAAEKKSARQKKRELIAKRAEAYEAEYRAAEREQIELARKARAEGNYFVPHE 87


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 13/54 (24%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
 Frame = +3

Query: 342 NEKVASRAQI-LKKAAEYIQFMRRKNNSHQQDIEDLKRQNNILEAQIRALEKAR 500
           ++K  +   I L++  + ++ +R KN++   +I DL+ +N  L  +I ++ K +
Sbjct: 490 SDKALAETNIRLQEVTKELETLRMKNSNDLNEIHDLREENEGLTLKIDSITKEK 543


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
           Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 20/73 (27%), Positives = 38/73 (52%)
 Frame = +1

Query: 181 IQILEHMLETASVEVVAITHRQRREHTTMPSRESDEIT*KIVLHHLENLFLLCKMRKWPV 360
           ++ + H     S+EV  I  + RR++    +RE + IT  +  + L N+F LC   K+  
Sbjct: 319 VRYVVHFFIRDSLEVPFIW-QHRRDYIVHNNRERNTITPLLSQNDLWNIFFLC--TKFWS 375

Query: 361 VHKY*KRLLNIYN 399
           +H   + +L +Y+
Sbjct: 376 LHSKKQDILKLYS 388


>SPAC8C9.17c |spc34||DASH complex subunit Spc34|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 164

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = +3

Query: 387 EYIQFMRRKNNSHQQDIEDLKRQNNILE--AQIRALEKART 503
           EY++ +  K N H   IE+L  +N +LE   Q++ LEK +T
Sbjct: 93  EYLETLVEKYNLHMSGIENL--ENVLLEQKEQLQQLEKRQT 131


>SPBC609.04 |caf5||spermine family transmembrane transporter
           Caf5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -1

Query: 508 PVVRAFSKALI*ASNILFCLFKSSISCWCELFFLLMNCIY 389
           P++ + S+ ++ + NI   L  S +  W E F +L   +Y
Sbjct: 310 PIILSISEPIVLSLNIYIGLIYSILYLWFEAFPILFTSVY 349


>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1115

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 20/78 (25%), Positives = 35/78 (44%)
 Frame = +3

Query: 264 NALERKRRDHIKDSFTSLRESVPALQNEKVASRAQILKKAAEYIQFMRRKNNSHQQDIED 443
           NAL ++  +    S  +L+E    + N +       LK    Y Q     N  H Q+++D
Sbjct: 234 NALAKEFEESQPGSSLTLKEQANVIDNLRKEVFGLKLKCYFLYDQL----NKFHDQEVQD 289

Query: 444 LKRQNNILEAQIRALEKA 497
           + +QN  L+     L++A
Sbjct: 290 IMKQNIDLKTLTMELQRA 307



 Score = 25.4 bits (53), Expect = 9.1
 Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +3

Query: 339 QNEKVASRA-QILKKAAEYIQFMRRKNNSHQQDIEDLKRQNNILEAQIRA 485
           +N+K  S   +++KK     Q ++ K NS +  + + K   N+L+A+ R+
Sbjct: 806 ENKKDQSGTDKLMKKIYHCEQSLKEKTNSLETLVSEKKELKNLLDAERRS 855


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 17/68 (25%), Positives = 30/68 (44%)
 Frame = +3

Query: 264 NALERKRRDHIKDSFTSLRESVPALQNEKVASRAQILKKAAEYIQFMRRKNNSHQQDIED 443
           N L    +D +K   ++L   + +LQ +    +AQI     EY   +   N+   +   D
Sbjct: 788 NLLLTSVKDKLKADLSNLESKLSSLQQDNFHMKAQIESSNQEYTATVDSMNSRILELSND 847

Query: 444 LKRQNNIL 467
           L+  N+ L
Sbjct: 848 LRVANSKL 855


>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 840

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
 Frame = +3

Query: 423 HQQDIEDLKRQNNILEAQIRA-LEKARTTGNYVDAHELGLGIKSEGSSHDTDSSDGEGTT 599
           +Q  I D KR   +L   + A L+        V   +  LG+    S  ++  S G G  
Sbjct: 253 YQYRITDNKRNTAVLAKLLTAALDAPYHDSPRVRRQDYLLGLIDTRSMSESKGS-GNGKL 311

Query: 600 RRVKKLKINGVNV*EEFHN*IILAVT 677
           R+VKK+  N   +  +  N I  A T
Sbjct: 312 RKVKKISKNAKRIFSKTRNAISTAFT 337


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -2

Query: 414 FFFS*IVYIQQPFLVFVHDWPLSHF 340
           F FS + ++ Q F+V+   +P+ HF
Sbjct: 131 FSFSFLFFLSQIFIVYFSSFPILHF 155


>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +3

Query: 321 ESVPALQNEKVASRAQILKKAAEYIQFMRRKNNSHQQDIEDLK 449
           + V +   EK+ S  + L    E IQF   +    Q+DI DLK
Sbjct: 297 KGVLSSNEEKIESINRDLSSLFEDIQFFISQRTKRQKDIIDLK 339


>SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 371

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
 Frame = +3

Query: 237 SQAEKRAHHNALERKRRD---HIKDSFTS-LRESVPALQNEKVASRAQ 368
           +++ K  H N++E+K  +    I D   + + ES+PALQN  + S ++
Sbjct: 197 NKSVKLEHKNSIEKKISNVDKPISDLIENDIHESLPALQNPPIQSHSE 244


>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 16/60 (26%), Positives = 29/60 (48%)
 Frame = +1

Query: 193 EHMLETASVEVVAITHRQRREHTTMPSRESDEIT*KIVLHHLENLFLLCKMRKWPVVHKY 372
           EHM +  SVE       +R+      +R ++ I  K  L  ++ L    K + +P++HK+
Sbjct: 754 EHMEDDDSVEEFDPIIEERQRMKRKANRPANIIPPKPKLRTVKTLLPAFKEQVYPILHKF 813


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,112,305
Number of Sequences: 5004
Number of extensions: 63895
Number of successful extensions: 200
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)