Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11l23
         (132 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    20   2.4  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    20   2.4  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    19   4.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       19   5.5  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     18   9.6  

>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -2

Query: 68  KGSPIYPKTSSFDRHR 21
           + S IYP   SFD  R
Sbjct: 405 RDSAIYPNPDSFDPER 420


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -3

Query: 103 IKTSNNKQAHIKKDHQFI 50
           I++ N+K+ + KK+  FI
Sbjct: 80  IESDNSKEVNDKKEENFI 97


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 7/26 (26%), Positives = 14/26 (53%)
 Frame = -3

Query: 118 QKHSLIKTSNNKQAHIKKDHQFIQKL 41
           Q+HS I  S    + +  + QF++ +
Sbjct: 195 QRHSTIHLSTGNYSRLACEIQFVRSM 220


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -3

Query: 124 FVQKHSLIKTSNNKQAH 74
           F+Q+HSL      +Q H
Sbjct: 91  FMQQHSLYLQQQQQQHH 107


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -2

Query: 62  SPIYPKTSS 36
           SP YP TSS
Sbjct: 439 SPQYPSTSS 447


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,307
Number of Sequences: 438
Number of extensions: 377
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 24
effective length of database: 135,831
effective search space used:  2580789
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)