Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11l19
(687 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0785 + 6095041-6095135,6095455-6095760,6098458-6098554,609... 31 1.1
01_07_0122 - 41196081-41196205,41197561-41198245,41198961-411993... 31 1.1
04_01_0167 + 1864956-1865495 29 3.5
11_01_0349 - 2614682-2614721,2614881-2614955,2615346-2615538,261... 29 4.6
01_02_0091 - 11023912-11024017,11024112-11024185,11024478-110248... 29 4.6
11_01_0101 - 738305-738556,738723-738977,739306-739554,739649-73... 28 6.0
12_01_0101 - 779047-779298,779459-779711,779857-780005,780033-78... 28 8.0
08_02_1159 + 24773328-24773994,24775430-24775558,24776080-247762... 28 8.0
07_01_0746 + 5714443-5714580,5715175-5715261,5715400-5715657,571... 28 8.0
04_03_0978 - 21385894-21386097,21386330-21386791,21387580-21387786 28 8.0
>07_01_0785 +
6095041-6095135,6095455-6095760,6098458-6098554,
6098943-6098999,6099202-6099751,6099922-6100234,
6100245-6100335,6101002-6101469
Length = 658
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = +3
Query: 552 RHGCLHHLTESEEAVLSYCQNT--QLGIGPPPAPAHS 656
R GC +++ E E +L CQN+ QL + P P HS
Sbjct: 318 RDGCSNNILEDEIQMLMDCQNSNCQLNLQGPDEPCHS 354
>01_07_0122 -
41196081-41196205,41197561-41198245,41198961-41199329,
41199405-41199514,41200539-41200833
Length = 527
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/53 (33%), Positives = 20/53 (37%)
Frame = +3
Query: 507 GGGCYSERPAPRHHSRHGCLHHLTESEEAVLSYCQNTQLGIGPPPAPAHSPLH 665
GGG + PAP HH H HH E P AP H P+H
Sbjct: 337 GGGSEAPSPAPMHHHGHHHHHHHHHGHE--------DSRHSAPAQAPVHYPVH 381
>04_01_0167 + 1864956-1865495
Length = 179
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = +3
Query: 459 NTAQCVSTGYMCRSPRGGGCYSERPAPRHHSRHGCLHHLTE 581
+ A ST C +PR G S APRHH LH + E
Sbjct: 47 HAASLRSTLPPCSTPRRAGQRSSTAAPRHHRPSPALHVVGE 87
>11_01_0349 -
2614682-2614721,2614881-2614955,2615346-2615538,
2615654-2616287
Length = 313
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 6/38 (15%)
Frame = +3
Query: 489 MCRSPRGGGCYSERPAPRHHSR------HGCLHHLTES 584
MC S GGG Y PA + R HG +HH ES
Sbjct: 177 MCYSTSGGGSYPTSPANSYAYRRAADHDHGDMHHADES 214
>01_02_0091 -
11023912-11024017,11024112-11024185,11024478-11024834,
11024938-11025166,11025468-11025559,11026099-11026326,
11027108-11027356,11027429-11027471,11027589-11027836,
11027922-11028035,11028122-11028322,11028417-11028593,
11028725-11028853,11029210-11029287,11029369-11029464,
11029563-11029634,11031549-11031677,11032105-11032220,
11033048-11033204,11033343-11033426,11033513-11033574,
11034901-11035067,11035162-11035226,11035315-11035371,
11035547-11035633,11036638-11036703,11036810-11036908
Length = 1193
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -2
Query: 476 NTLRSVAITPNSISIGFFGFIQSDICGLRRSIFTVSSRELV 354
N L + I PN SI ++ D+CG+ R++ T +S+ +V
Sbjct: 381 NRLENFMILPNMASIDDITSVRYDVCGIVRTV-TPNSKSMV 420
>11_01_0101 - 738305-738556,738723-738977,739306-739554,739649-739843,
739953-740060,740184-740405,740806-741390,741495-741863,
742423-742529,742755-742883,743027-743084,743166-743248,
744115-744196,744274-744350,744477-744560,744649-744718,
744796-744884,744965-745654,746127-746439
Length = 1338
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -2
Query: 431 GFFGFIQSDICGLRRSIF-TVSSRELVQDQ*KTHAKINHSHGY 306
G F +ICGL+RS+ +V+S L+ + K+ ++H Y
Sbjct: 993 GTVSFEHRNICGLKRSLIGSVTSSNLLNPEDDLSFKLEYAHPY 1035
>12_01_0101 - 779047-779298,779459-779711,779857-780005,780033-780281,
780377-780571,780681-780788,780935-781156,781669-781986,
781988-782615,783059-783135,783161-783267,783491-783619,
783763-783820,783902-783984,784458-784539,784617-784693,
784827-784910,784999-785068,785146-785234,785319-786008,
786485-786797
Length = 1410
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Frame = -2
Query: 452 TPNSISI---GFFGFIQSDICGLRRSIF-TVSSRELVQDQ*KTHAKINHSHGY 306
TP SI G F +ICGL+RS+ +V++ L+ + K+ ++H Y
Sbjct: 1006 TPTLASIQPGGTVSFEHHNICGLKRSLIGSVTTSNLLNPEDDLSFKLEYAHPY 1058
>08_02_1159 +
24773328-24773994,24775430-24775558,24776080-24776220,
24777393-24777487,24777545-24778606
Length = 697
Score = 27.9 bits (59), Expect = 8.0
Identities = 29/105 (27%), Positives = 40/105 (38%), Gaps = 8/105 (7%)
Frame = +3
Query: 324 NFSVCFLLVLYQFSAAYSEDGSSESTDIGLNEAKETDRDGVRCYCNTA----QCVSTGYM 491
N S C ++ E S+ S G N D DG RCYC+ V G
Sbjct: 164 NSSACSASTNASAPSSAPECCSANSFCKGYN-GTTADYDGYRCYCSDGYEGNPYVDGGCR 222
Query: 492 ----CRSPRGGGCYSERPAPRHHSRHGCLHHLTESEEAVLSYCQN 614
C+SP CY + R C HH + ++L+ CQ+
Sbjct: 223 DIDECKSPHIYPCYGDCKNTRGGYDCQC-HHGYKGNASILNGCQD 266
>07_01_0746 +
5714443-5714580,5715175-5715261,5715400-5715657,
5715765-5715929,5716106-5716159,5716318-5716464,
5716735-5717112
Length = 408
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +3
Query: 381 DGSSESTDIGLNEAKETDRDGVRCYCNTAQCVSTGYMCRSPRGGGCYSER 530
DG+ ST +G E + G Y Q V + ++P+G G Y+E+
Sbjct: 330 DGTHTSTQMGSGRFPE-EGFGKASYFKNIQVVDSSNQLKAPKGVGTYTEQ 378
>04_03_0978 - 21385894-21386097,21386330-21386791,21387580-21387786
Length = 290
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -2
Query: 530 TFAVTAAATWRPTHVPRANTLRSVAITPNSIS 435
TF+ AAA PT++ R TL A TP +S
Sbjct: 4 TFSAAAAAAASPTYLHRPRTLAPPASTPARLS 35
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,832,840
Number of Sequences: 37544
Number of extensions: 479357
Number of successful extensions: 1411
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1411
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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