Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11l19
         (687 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    24   1.6  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   2.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.7  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   4.8  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   4.8  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   8.3  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +2

Query: 29  RCVTIVRNALEACLQNCKSIVQ 94
           +C T   N  E CL+NC    Q
Sbjct: 152 KCSTYQSNGEEVCLENCTGYQQ 173


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +2

Query: 533 SSQTPL*ARMSPSFD*IRRSGAILLPEYSTRYWTAPCSGP 652
           SS  P  A++   FD   +  A+LL   S +  T P  GP
Sbjct: 349 SSSGPDSAKLDKIFDIATKENAMLLSGRSQKSTTGPPPGP 388


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -3

Query: 496  RHMYPVLTHCA 464
            RHMY  L HCA
Sbjct: 1686 RHMYEELNHCA 1696



 Score = 21.4 bits (43), Expect = 8.3
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -3

Query: 448  RTPSRSVSLASFNPISVDSDDPSSL*AAENWY 353
            R PS+     + N  S + DDP++    E+ Y
Sbjct: 1789 RVPSQGGGSGTHNVFSPEYDDPANCAPEEDQY 1820


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +1

Query: 313 WL*LILACVFYWSCTSSRLL 372
           WL ++  C++Y+S T + +L
Sbjct: 308 WLYILSGCLYYFSTTINPIL 327


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 14/39 (35%), Positives = 16/39 (41%)
 Frame = +3

Query: 543 HHSRHGCLHHLTESEEAVLSYCQNTQLGIGPPPAPAHSP 659
           HHS     HH   +  A  SY    Q+G  P   P H P
Sbjct: 433 HHSHAATPHHQHSTPLAHSSYPAAIQIGHTPHHHP-HPP 470


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 471 CVSTGYMCRSPRG 509
           C+STG  C  PRG
Sbjct: 135 CLSTGGSCYWPRG 147


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,479
Number of Sequences: 438
Number of extensions: 4690
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)