Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11l16
         (730 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    27   3.6  
SPBC3B9.12 |||TRAPP complex subunit Trs23 |Schizosaccharomyces p...    27   3.6  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    27   3.6  
SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyce...    26   6.3  
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    26   6.3  
SPBC27B12.13 |tom40|SPBC8D2.22|mitochondrial TOM complex subunit...    25   8.4  

>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1679

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
 Frame = -2

Query: 705  QHDQDHNYARYMSIYWDKLI----NIETTHPGLLDDCQKSFMGIR 583
            +HD + + A+ M   WD L+    N+ +    L++DC + FMG R
Sbjct: 1036 KHDPNPDVAKTMGEIWDTLVPSDLNLASHRKYLVEDCLE-FMGSR 1079


>SPBC3B9.12 |||TRAPP complex subunit Trs23 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 132

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +2

Query: 476 EFVMFTIPEALEAASALIVCSSVKSTGILENGFIVLRMPIK 598
           +FV+FT  +   A   L     + S  +L+N F  L MPIK
Sbjct: 77  KFVLFTEKKTTNARLQLQKFYELYSDYVLKNPFYTLEMPIK 117


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
 Frame = -1

Query: 208  HPRNRTSTNEKFDTLLGCYSKR---IVYGHHTSMYCR*F*SYCRRLAPF 71
            HP   +  NE++D LLG    +     YG H S       SY  RL PF
Sbjct: 1984 HPERESQFNERYDLLLGLNDSQQQPFHYGTHYSS-AMIVCSYLIRLRPF 2031


>SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 398

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = -1

Query: 265 LSTPSRRAAQYLEPNLP*LHPRNRTSTNEKFDTLLGCYSKRIVYGHHTSMYCR*F 101
           L T   R A++ E         N+ +T+E+F T LG  S  I+  +H S+  + F
Sbjct: 259 LRTFPLRIAKHSENGFLVAQHLNKLATDEQFATSLGIDSSLILEVYHNSLQTKEF 313


>SPBC16C6.06 |pep1|vps10|sorting receptor for
           CPY|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1466

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +3

Query: 261 LSNYEKVPEIQMAGAQCTGAFEGQRTEPVTGNILSYKLRGTLSRSY 398
           L  ++K+P   + G +CT        EP T N  S+   GT   S+
Sbjct: 658 LDTFQKIPYRLVPGNKCTPNKRDSHREPQTFNCDSFNEPGTEITSF 703


>SPBC27B12.13 |tom40|SPBC8D2.22|mitochondrial TOM complex subunit
           Tom40|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
 Frame = -3

Query: 467 LYDIFVLQLVMRKM-----VLWY*QFLSVGPG*RTAQFVGQYVSCDWFS 336
           +Y I +LQ V  K+      LW     S+GP   T  ++ +Y + DW +
Sbjct: 165 IYIISLLQSVTPKLSLGVEALWQKPSSSIGPEEATLSYMTRYNAADWIA 213


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,037,883
Number of Sequences: 5004
Number of extensions: 64565
Number of successful extensions: 182
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)