Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11l16
         (730 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-57...    29   3.8  
08_01_0238 - 1988688-1988830,1988989-1989257,1989339-1989600,198...    28   6.6  
12_01_0248 - 1841454-1841820,1842223-1842728                           28   8.7  

>02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-579174,
            579266-579370,579975-580028,580244-580344,580454-581423,
            582030-582203,582341-582643,582719-582856,582993-583247,
            584230-584370,585008-585289,585395-585540,585627-585690,
            585723-585799,586285-586301,587728-587867,587972-588029,
            588121-588218,588727-588776,589260-589743
          Length = 2630

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 17/64 (26%), Positives = 31/64 (48%)
 Frame = -1

Query: 352  PVTGSVL*PSNAPVHCAPAI*ISGTFS*LLSTPSRRAAQYLEPNLP*LHPRNRTSTNEKF 173
            P+  S L   N P    PA  +S   +  +    +++A  LE +L  +HP + + T  + 
Sbjct: 1797 PLVQSSLSSQNPPAEAEPASTLSRETARDVQPERQQSASVLETSLQRMHPDDDSQTKHQL 1856

Query: 172  DTLL 161
            +T+L
Sbjct: 1857 ETVL 1860


>08_01_0238 -
           1988688-1988830,1988989-1989257,1989339-1989600,
           1989693-1989805,1990560-1990594,1990771-1990878,
           1992178-1992483
          Length = 411

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -3

Query: 353 SCDW-FSPLTFKCSCALCTCHLNFRNFLIIAKHSQQTS 243
           S  W F P T   +C LCT  LN   FL+I++ S  T+
Sbjct: 294 SASWNFPPFTLFLNC-LCTFILNMSVFLVISRTSALTA 330


>12_01_0248 - 1841454-1841820,1842223-1842728
          Length = 290

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +1

Query: 181 RLLMFDFAGEAMGDSVQDTEQLVCWECLAIMRKFLKFKWQVHNAQEH 321
           RLLM     +++ DSV D+   V + C    RKF    W ++ A  H
Sbjct: 137 RLLMTHIPSQSLPDSVADSGCKVVYLCRDPNRKFR--PWDINEAHRH 181


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,960,798
Number of Sequences: 37544
Number of extensions: 357020
Number of successful extensions: 871
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)