Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11l16
         (730 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   2.2  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   2.2  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   3.9  
AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.            22   5.2  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 415 YHKTIFLITNCRTKISYNRERVCNVYN 495
           Y   I L+TN R   S   E  CN+++
Sbjct: 519 YFGEICLLTNARRVASVRAETYCNLFS 545


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 415 YHKTIFLITNCRTKISYNRERVCNVYN 495
           Y   I L+TN R   S   E  CN+++
Sbjct: 487 YFGEICLLTNARRVASVRAETYCNLFS 513


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +1

Query: 466 NRERVCNVYNSRS 504
           NR+  CN+YN+ S
Sbjct: 370 NRQNSCNIYNASS 382


>AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.
          Length = 50

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = +1

Query: 298 QVHNAQEHLKVKGLNQSQETYCPTNCAVR 384
           +VH  ++  + K LNQ+Q      +C+++
Sbjct: 2   KVHQLKKKRRKKNLNQNQMMIWALDCSIK 30


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,292
Number of Sequences: 438
Number of extensions: 4614
Number of successful extensions: 25
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)