Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11l15
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|...    28   1.5  
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    26   6.0  
SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces pombe...    25   7.9  

>SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -3

Query: 622 PYVNGAFH-LEL*SRSLDCRVKPLFYPSNKF 533
           PY + AFH L+  S+SL   + P F+P NK+
Sbjct: 194 PYSSHAFHYLDGYSQSLPYHMFPFFFPLNKY 224


>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 8/28 (28%), Positives = 20/28 (71%)
 Frame = +2

Query: 41  VLKFLE*FLETRHFISTIFNYLNWNQMF 124
           ++K+L+ F++T+H    + +Y+N  ++F
Sbjct: 560 IVKYLD-FVKTKHHFGIVLDYVNGGELF 586


>SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 570

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -2

Query: 455 NGLYANYNFCAVDFDYPTLFLDFGSVSRNNFTI 357
           +GL+A YN    ++DY  L   +G+ +  ++ I
Sbjct: 488 HGLHAVYNDINTEWDYQNLLKGYGAKNSRSYNI 520


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,669,620
Number of Sequences: 5004
Number of extensions: 50930
Number of successful extensions: 95
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)