Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11l14
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.05 |||KRE9 family cell wall biosynthesis protein |Schi...    30   0.25 
SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.5  
SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy...    25   7.2  
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ...    25   7.2  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    25   7.2  

>SPBC11C11.05 |||KRE9 family cell wall biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 284

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = +1

Query: 250 WQRCRRSIDCASVVCYATLLCALTMALPSPCTVLYSQPA 366
           W+     I    +      +C+ +M  P PC VLY+ P+
Sbjct: 43  WEESNTGIPLEDITNTVFYICSGSMDAPQPCAVLYTSPS 81


>SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 390

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = +1

Query: 274 DCASVVCYATLLCALTMALPSPCTVLYSQP--AAHTSWHCSQQLFIL 408
           DCA  + +  +  A   ++P PC +    P     TS+   Q L+I+
Sbjct: 253 DCALTLSFICIFLAQYTSIPLPCPLQLPSPDQKPMTSFSSEQMLYIM 299


>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 523

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 333 FPVHRAILSACSPYFLALFTTTLHSREQSDVL 428
           +PVHRAI+  C  +   L    L S ++  VL
Sbjct: 317 YPVHRAIMCRCEYFLDMLAGPFLESNQELPVL 348


>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 463

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -3

Query: 176 SGKRHH*NRSRFQKN-RVTKVTCRDTNEI*SN 84
           + K+H  N S+FQ+N R+ K+   D + I S+
Sbjct: 90  ASKKHRDNLSKFQRNSRIKKLQSEDASSIASS 121


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = -3

Query: 140 QKNRVTKVTCRDTNEI*SNKFLIKNKTVKNNSKINN 33
           + N V K     T+EI  N    K +TV NNSKI N
Sbjct: 855 ESNVVIKDISNQTHEI--NSVENKAETVSNNSKITN 888


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,474,414
Number of Sequences: 5004
Number of extensions: 47817
Number of successful extensions: 104
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)