Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11l14
         (655 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      39   4e-05
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          38   1e-04
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    22   6.0  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    22   6.0  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   6.0  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    22   6.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   6.0  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 39.1 bits (87), Expect = 4e-05
 Identities = 28/100 (28%), Positives = 42/100 (42%)
 Frame = +3

Query: 264 ALHRLRECRLLCDAIVRADDGASFPVHRAILSACSPYFLALFTTTLHSREQSDVLISGVR 443
           A   LR+     D +  A DG S   HR +LSACSPYF  L  +T    +   +++  V 
Sbjct: 21  AFENLRDDEDFVD-VTLACDGRSLKAHRVVLSACSPYFRELLKST--PCKHPVIVLQDVA 77

Query: 444 SXXXXXXXXXXXXXXIDVTDTNVHELLMTADYLAFLGVLQ 563
                          ++V   ++   L TA+ L   G+ Q
Sbjct: 78  FSDLHALVEFIYHGEVNVHQRSLSSFLKTAEVLRVSGLTQ 117


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 37.5 bits (83), Expect = 1e-04
 Identities = 25/99 (25%), Positives = 42/99 (42%)
 Frame = +3

Query: 270 HRLRECRLLCDAIVRADDGASFPVHRAILSACSPYFLALFTTTLHSREQSDVLISGVRSX 449
           H+L +     D  +  ++ AS   H+ +LSACS YF  L  +    +  + ++   V   
Sbjct: 27  HQLLQTEAFVDVTLACNE-ASLKAHKVVLSACSSYFQKLLLSN-PCKHPTIIMPQDVCFN 84

Query: 450 XXXXXXXXXXXXXIDVTDTNVHELLMTADYLAFLGVLQL 566
                        IDV+   +  LL TAD L   G+ ++
Sbjct: 85  DLKFIIEFVYRGEIDVSQAELQSLLKTADQLKIKGLCEV 123


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 74  IKNKTVKNNSKINN 33
           + NKT+ NN+  NN
Sbjct: 85  LSNKTIHNNNNYNN 98


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 74  IKNKTVKNNSKINN 33
           + NKT+ NN+  NN
Sbjct: 85  LSNKTIHNNNNYNN 98


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 74  IKNKTVKNNSKINN 33
           + NKT+ NN+  NN
Sbjct: 318 LSNKTIHNNNNYNN 331


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 74  IKNKTVKNNSKINN 33
           + NKT+ NN+  NN
Sbjct: 307 LSNKTIHNNNNYNN 320


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = +2

Query: 212 SDGGSGNRSVHVGGSDAGAPSTARVSSA 295
           ++GG+       G +DA  P+T   + A
Sbjct: 197 ANGGAARDESKAGSTDASTPATVTTTGA 224


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,116
Number of Sequences: 438
Number of extensions: 3669
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)