Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11l11
(699 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0462 - 29245307-29246032,29246120-29246235,29246327-292465... 35 0.054
05_05_0034 - 21741148-21741275,21741890-21741928,21742007-217421... 35 0.071
01_01_0827 + 6443319-6446085,6446317-6446407,6446502-6448017,644... 34 0.094
02_03_0300 + 17454622-17455402,17455535-17456977,17457015-174573... 33 0.29
05_05_0030 - 21698625-21698752,21699589-21699627,21699708-216998... 31 0.88
08_01_0652 + 5627226-5628395,5628885-5629040,5629115-5629304,562... 29 2.7
11_04_0350 - 16658497-16659015 28 6.2
09_04_0155 - 15185985-15186755,15187049-15187236,15187479-151875... 28 6.2
06_02_0125 + 12122812-12122911,12123647-12123993 28 8.2
>02_05_0462 -
29245307-29246032,29246120-29246235,29246327-29246546,
29246725-29246843,29247100-29247180,29247279-29247330,
29247449-29247574
Length = 479
Score = 35.1 bits (77), Expect = 0.054
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = -2
Query: 695 PETVMFHTGTQSSPDLGSRE-SSSHRLAVVSGTRIVSKPNTSLDSLTSQNVLVAFLVISV 519
P FHT S +L + E + H + +V GTR++S LTS +++ + V
Sbjct: 62 PRLPAFHTCVGSKDELLTEEWYNEHGIVLVLGTRVISADVRQKTLLTSSGETISYKTLIV 121
Query: 518 LSGSRA 501
+G+RA
Sbjct: 122 ATGARA 127
>05_05_0034 - 21741148-21741275,21741890-21741928,21742007-21742121,
21742227-21742292,21743213-21743371,21743573-21743609,
21743757-21744194,21744735-21744817,21744920-21744956,
21745146-21745214,21745316-21745407,21745481-21745565,
21745903-21745982,21746327-21746724,21746813-21747717,
21747825-21747915,21748617-21750680,21750681-21750749,
21750850-21751273,21751644-21751763
Length = 1832
Score = 34.7 bits (76), Expect = 0.071
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +2
Query: 476 DENV-TLCLALGYQRVQRLPEKLQVH----FETLENLKKYSASKLFECQKQQQ 619
D NV +C+ LG+ +Q LPE LQ+H + LE ++KY +L C+ QQ
Sbjct: 1414 DTNVGRICVRLGWVPIQPLPESLQLHLLELYPVLETIQKYLWPRL--CKLDQQ 1464
>01_01_0827 + 6443319-6446085,6446317-6446407,6446502-6448017,
6448164-6448243,6449045-6449129,6449221-6449312,
6449388-6449456,6449544-6449580,6449662-6449744,
6450427-6450873,6450978-6451014,6451101-6451158,
6451243-6451382,6451610-6451675,6451794-6451908,
6453261-6453299,6453482-6453543
Length = 1927
Score = 34.3 bits (75), Expect = 0.094
Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 5/53 (9%)
Frame = +2
Query: 476 DENV-TLCLALGYQRVQRLPEKLQVH----FETLENLKKYSASKLFECQKQQQ 619
D NV +C+ LG+ +Q LPE LQ+H + LEN++KY +L C+ Q+
Sbjct: 1515 DTNVGRICVRLGWVPLQPLPESLQLHLLEMYPMLENIQKYLWPRL--CKLDQR 1565
>02_03_0300 + 17454622-17455402,17455535-17456977,17457015-17457317,
17458429-17458519,17458623-17459757,17459998-17460077,
17460449-17460533,17460614-17460705,17461079-17461147,
17461227-17461263,17461351-17461433,17461695-17461840,
17461868-17462138,17462245-17462281,17462428-17462721
Length = 1648
Score = 32.7 bits (71), Expect = 0.29
Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 5/54 (9%)
Frame = +2
Query: 476 DENVT-LCLALGYQRVQRLPEKLQVH----FETLENLKKYSASKLFECQKQQQV 622
D NV +C+ LG+ +Q LPE LQ+H + LE+++KY +L C+ Q +
Sbjct: 1308 DTNVARICVRLGWVPLQPLPESLQLHLLELYPLLEHIQKYIWPRL--CKLDQLI 1359
>05_05_0030 - 21698625-21698752,21699589-21699627,21699708-21699822,
21699927-21699992,21701064-21701203,21701424-21701473,
21701608-21702045,21702757-21702839,21702941-21702977,
21703366-21703457,21703531-21703615,21703950-21704029,
21704049-21704105,21704350-21704747,21706322-21707223,
21707331-21707421,21708123-21710273,21710375-21710813,
21711180-21711299
Length = 1836
Score = 31.1 bits (67), Expect = 0.88
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Frame = +2
Query: 476 DENV-TLCLALGYQRVQRLPEKLQVHFETLENL--KKYSASKLFECQKQQQVGGNCSHES 646
D NV +C+ LG+ +Q LPE LQ+H L L + + K+F C K + C S
Sbjct: 1443 DTNVGRICVRLGWVPIQPLPESLQLHLLELYELHYQMITFGKVF-CTKSKPNCNACPMRS 1501
Query: 647 Q 649
+
Sbjct: 1502 E 1502
>08_01_0652 +
5627226-5628395,5628885-5629040,5629115-5629304,
5629590-5629729
Length = 551
Score = 29.5 bits (63), Expect = 2.7
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Frame = +2
Query: 452 LGENLQLADENVTLCLALGYQRVQRLPEKLQVHFETLENLKKYS--ASKLFECQKQQQVG 625
LGE A+ + + L +QRL KL+++F T + L+ + + F C+ Q V
Sbjct: 411 LGEWCMAAEFDTLIFLLQRSPNLQRLFLKLKLNFNTRKPLESGAKPMGRSFTCKDLQMVK 470
Query: 626 GNCSHESQDLERTVFLYETSPFPV 697
CS + + L+ + P+
Sbjct: 471 IRCSKDDVRVHTLACLFRANGIPI 494
>11_04_0350 - 16658497-16659015
Length = 172
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +2
Query: 404 RKPRNGTYCKESIVKLLGENLQLADENVT--LCLALGYQRVQRLPEKLQVHFETLENLKK 577
+K + Y +E I+ +G +L + T L ALG + + +LP L H +++ K+
Sbjct: 50 KKKKKVRYTQEQILYCIGNPEELPERRDTPKLTEALGAELLAKLPPDLVAHLRAMDDAKE 109
>09_04_0155 -
15185985-15186755,15187049-15187236,15187479-15187517,
15187741-15187768
Length = 341
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -3
Query: 208 EICRLQTNDEKHR*KHKYVPSHLLFKHHIIHKNLQST 98
EIC+LQ N EK H+Y H ++ L +T
Sbjct: 304 EICKLQCNSEKVLSDHRYGKKHQAKLEKVLQAKLNAT 340
>06_02_0125 + 12122812-12122911,12123647-12123993
Length = 148
Score = 27.9 bits (59), Expect = 8.2
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +1
Query: 235 GADCGHPGPNSEIAGGHGHP 294
G GHPG GG+GHP
Sbjct: 69 GGGYGHPGYGGGYGGGYGHP 88
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,157,939
Number of Sequences: 37544
Number of extensions: 367277
Number of successful extensions: 942
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -