Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11l06
         (534 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|ch...    26   3.1  
SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr 2|||M...    26   4.1  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    25   5.4  
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom...    25   5.4  
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    25   7.1  
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    25   7.1  
SPBPB21E7.09 ||SPAPB21E7.09, SPAPB21E7.09|L-asparaginase |Schizo...    25   7.1  
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc...    25   7.1  
SPAC186.03 |||L-asparaginase|Schizosaccharomyces pombe|chr 1|||M...    25   7.1  

>SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 445

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 16/65 (24%), Positives = 33/65 (50%)
 Frame = +3

Query: 294 FPKLKLIATILSVPPQIHMLVLLHRSVAARIENETLTKAIRAYSGLTLASTVWTVVSLMR 473
           +  LKL+  + SV P + +  +L R        +++T  +++ SGL+ A   + ++    
Sbjct: 140 YENLKLLKFLSSVGPHVRVSQMLAR--------DSVTTRLQSPSGLSFAELTYQLLQAYD 191

Query: 474 Y*YIY 488
           Y Y+Y
Sbjct: 192 YSYLY 196


>SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 556

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +2

Query: 77  RLDRNV*NINIGSLHLRSNNIQTVMVHSYG 166
           +LD  V N  + SLHLRS+ +QT + H  G
Sbjct: 245 QLDGKV-NPLVTSLHLRSSALQTALFHPDG 273


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +3

Query: 369 SVAARIENETLTKAIRAYSGLTLASTVWTVVSLMRY 476
           S++A +  +TL + + A     L+STVW++  L+ Y
Sbjct: 544 SISASVGMKTLFEDLMAEKSRGLSSTVWSLQLLLCY 579


>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 355

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 194 DDITPVDQSSHTNEP 150
           +D+ PVD  SH NEP
Sbjct: 286 EDLDPVDSISHMNEP 300


>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -1

Query: 495 HSHIYINIASKTQPSTLLMLKSIRYTLVLPSLKFR 391
           H    I+++SK+    LL  + ++YTL LPS +FR
Sbjct: 187 HKPKKISLSSKSTLEDLL--EGVKYTLSLPSDQFR 219


>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
 Frame = +3

Query: 282 PTRMFPKLKLIATILSVPPQI---HMLVLLH 365
           P   FP LK+  T   +PP++   +M+++LH
Sbjct: 512 PPHFFPVLKMFLTNEHLPPKLSPWNMMIVLH 542


>SPBPB21E7.09 ||SPAPB21E7.09, SPAPB21E7.09|L-asparaginase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 360

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +3

Query: 156 IRMGTLIHWSYIIGSAIYPKNTNGCIALSGSCFAFVIIGSVLPTR 290
           I  GT+I  +  IGSA Y   TNG +  +   +    +G +L  R
Sbjct: 182 IGRGTMILLNDRIGSAFYTTKTNGNMLDTFKSYEAGFLGMILDQR 226


>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 288 RMFPKLKLIATILSVPPQIHMLVLL 362
           R F KLKL   +++VP  + M++L+
Sbjct: 557 RSFTKLKLFILLIAVPFALPMIILI 581


>SPAC186.03 |||L-asparaginase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 360

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +3

Query: 156 IRMGTLIHWSYIIGSAIYPKNTNGCIALSGSCFAFVIIGSVLPTR 290
           I  GT+I  +  IGSA Y   TNG +  +   +    +G +L  R
Sbjct: 182 IGRGTMILLNDRIGSAFYTTKTNGNMLDTFKSYEAGFLGMILDQR 226


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,199,131
Number of Sequences: 5004
Number of extensions: 46401
Number of successful extensions: 121
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)