Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11l03
         (276 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0085 - 8271718-8272005,8272110-8272393,8273610-8274012,827...    29   0.40 
05_03_0359 - 12929240-12929376,12931379-12933497,12933594-129337...    29   0.70 
10_06_0102 + 10758601-10758948,10759051-10759257,10759349-107595...    28   1.2  
09_03_0034 + 11751965-11752010,11752138-11752205,11753142-117532...    27   2.1  
06_03_0551 - 22027441-22028224,22029015-22029344,22029510-220297...    25   6.5  
03_02_0463 - 8673313-8673639,8674040-8674126,8674710-8674790,867...    25   8.7  

>05_03_0085 -
           8271718-8272005,8272110-8272393,8273610-8274012,
           8274792-8274816,8275686-8276149
          Length = 487

 Score = 29.5 bits (63), Expect = 0.40
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = -1

Query: 123 ASALIIWSLLCKSGLAIASVILNNKDPLYFYRFRSVLFL 7
           A A+  W +L   G AIA+  L +KDPL++Y    V FL
Sbjct: 315 AFAIFGWGVLVPLG-AIAARYLRHKDPLWYYLHVLVQFL 352


>05_03_0359 - 12929240-12929376,12931379-12933497,12933594-12933773,
            12933905-12934118,12934199-12934551,12934642-12934864,
            12934953-12935230,12935456-12935725,12935817-12935939,
            12936025-12936102,12936351-12936527,12936597-12936686,
            12937010-12937120,12937397-12937585,12937667-12937858,
            12937990-12938076,12938153-12938257,12938340-12938396,
            12938471-12938545,12938647-12938763,12938876-12939000,
            12939082-12939121,12939241-12939291,12939382-12939569,
            12939808-12939901,12939976-12940149,12940242-12940337,
            12940597-12940689,12940794-12940955,12941034-12941240,
            12941356-12941728,12942379-12942436,12943096-12943171,
            12943874-12943941,12944321-12944642
          Length = 2433

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +2

Query: 68   DAIARPDLHNKDHIMRAEAFKIVLSQIGEHIASRG 172
            D IAR DL +   + RAE F+    Q+G  IA+ G
Sbjct: 923  DLIARLDLDDPSAVKRAEPFEDTFPQMGLPIAASG 957


>10_06_0102 +
           10758601-10758948,10759051-10759257,10759349-10759507,
           10759617-10759709,10759913-10760008,10760457-10760724,
           10760805-10761047,10761298-10761422,10761499-10761615,
           10761705-10761779,10761886-10761942,10762035-10762139,
           10762244-10762330,10762790-10763047,10763075-10763263,
           10763418-10763528,10763640-10763729,10763814-10763990,
           10764075-10764152,10764412-10764726,10764819-10765162,
           10765304-10765541,10765631-10765998,10766106-10766316,
           10766622-10766801,10766886-10769045,10769151-10769207
          Length = 2251

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +2

Query: 50  LLFKITDAIARPDLHNKDHIMRAEAFKIVLSQIGEHIASRG 172
           + +K  D IAR DL +   + RAE F     ++G   A  G
Sbjct: 743 IFYKAADLIARLDLDDPSSVRRAEPFHGTFPKLGPPTAVSG 783


>09_03_0034 +
           11751965-11752010,11752138-11752205,11753142-11753252,
           11753626-11753712,11753800-11754008,11754653-11754926,
           11756595-11757079,11758367-11758484,11758584-11758700,
           11758779-11758925,11759061-11759135,11759198-11759266,
           11759914-11760024,11760183-11760267,11760404-11760501,
           11760628-11760720,11760806-11760880
          Length = 755

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +2

Query: 35  KYNGSLLFKITDAIARPDLHNKDHIMRAEAFKIV 136
           KYN  L F   D IA  +L+NK   + A  + IV
Sbjct: 156 KYNAGLSFSNDDLIASLNLNNKGDSLTASYYHIV 189


>06_03_0551 -
           22027441-22028224,22029015-22029344,22029510-22029778,
           22030530-22031453,22037761-22038360,22040049-22040267
          Length = 1041

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 14/24 (58%), Positives = 14/24 (58%)
 Frame = -1

Query: 231 VSSTDQQLRFSG*TRGLSSVPLEA 160
           VSS DQQ   SG  R   SVP EA
Sbjct: 57  VSSGDQQAAASGARRAACSVPAEA 80


>03_02_0463 -
           8673313-8673639,8674040-8674126,8674710-8674790,
           8674896-8675048,8675129-8675185,8675293-8675569,
           8675634-8675749,8676372-8676523,8676627-8676816,
           8676935-8677345
          Length = 616

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +2

Query: 98  KDHIMRAEAFKIVLSQ 145
           K+HIM  + F+IVLSQ
Sbjct: 337 KEHIMAGDIFQIVLSQ 352


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,659,805
Number of Sequences: 37544
Number of extensions: 111270
Number of successful extensions: 199
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 14,793,348
effective HSP length: 69
effective length of database: 12,202,812
effective search space used: 268461864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)