Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11l03
(276 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF078792-1|AAC26947.2| 352|Caenorhabditis elegans Serpentine re... 27 1.9
Z70718-11|CAA94680.1| 590|Caenorhabditis elegans Hypothetical p... 26 4.4
Z68301-10|CAA92629.1| 590|Caenorhabditis elegans Hypothetical p... 26 4.4
U97403-8|AAB52470.1| 720|Caenorhabditis elegans Hypothetical pr... 26 4.4
U80444-7|AAO12447.1| 380|Caenorhabditis elegans Hypothetical pr... 26 4.4
U80444-5|AAB37791.1| 397|Caenorhabditis elegans Hypothetical pr... 26 4.4
Z81050-10|CAB02860.1| 329|Caenorhabditis elegans Hypothetical p... 25 5.8
U64600-1|AAK39203.1| 500|Caenorhabditis elegans Hypothetical pr... 25 5.8
L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family... 25 5.8
AF038604-2|AAB92013.1| 468|Caenorhabditis elegans Hypothetical ... 25 5.8
U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated p... 25 7.7
D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine recep... 25 7.7
>AF078792-1|AAC26947.2| 352|Caenorhabditis elegans Serpentine
receptor, class h protein40 protein.
Length = 352
Score = 27.1 bits (57), Expect = 1.9
Identities = 11/44 (25%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -1
Query: 159 MCSPICERTI-LNASALIIWSLLCKSGLAIASVILNNKDPLYFY 31
+C+ C+ T + ++ WS++C L I+ +N+K+ L ++
Sbjct: 64 LCTMFCDFTWGILVIPMMFWSVVCGYTLGISKYFINSKNILMYF 107
>Z70718-11|CAA94680.1| 590|Caenorhabditis elegans Hypothetical
protein W01B6.9 protein.
Length = 590
Score = 25.8 bits (54), Expect = 4.4
Identities = 17/72 (23%), Positives = 33/72 (45%)
Frame = +2
Query: 23 LKR*KYNGSLLFKITDAIARPDLHNKDHIMRAEAFKIVLSQIGEHIASRGTEDNPRVHPE 202
LK+ K +GSL +I D AR ++HI + + + QI + + E +
Sbjct: 519 LKQMKLDGSLEKEIEDETARMSATGEEHIQKRSQLEAGIRQILDLMVVEIAEIENKKIGF 578
Query: 203 NLNC*SVEDTIM 238
++ C +E ++
Sbjct: 579 HVQCAGIEKAVL 590
>Z68301-10|CAA92629.1| 590|Caenorhabditis elegans Hypothetical
protein W01B6.9 protein.
Length = 590
Score = 25.8 bits (54), Expect = 4.4
Identities = 17/72 (23%), Positives = 33/72 (45%)
Frame = +2
Query: 23 LKR*KYNGSLLFKITDAIARPDLHNKDHIMRAEAFKIVLSQIGEHIASRGTEDNPRVHPE 202
LK+ K +GSL +I D AR ++HI + + + QI + + E +
Sbjct: 519 LKQMKLDGSLEKEIEDETARMSATGEEHIQKRSQLEAGIRQILDLMVVEIAEIENKKIGF 578
Query: 203 NLNC*SVEDTIM 238
++ C +E ++
Sbjct: 579 HVQCAGIEKAVL 590
>U97403-8|AAB52470.1| 720|Caenorhabditis elegans Hypothetical
protein T10E9.2 protein.
Length = 720
Score = 25.8 bits (54), Expect = 4.4
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = -3
Query: 160 NVFTNLRKDDFK 125
NVF NLRKD+FK
Sbjct: 337 NVFKNLRKDEFK 348
>U80444-7|AAO12447.1| 380|Caenorhabditis elegans Hypothetical
protein F26B1.2c protein.
Length = 380
Score = 25.8 bits (54), Expect = 4.4
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -2
Query: 194 ERVDCLQFLLKQCVHQSAKGR 132
+++ Q+LL+QCV S +GR
Sbjct: 353 QQIHSAQYLLQQCVRNSTQGR 373
>U80444-5|AAB37791.1| 397|Caenorhabditis elegans Hypothetical
protein F26B1.2a protein.
Length = 397
Score = 25.8 bits (54), Expect = 4.4
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -2
Query: 194 ERVDCLQFLLKQCVHQSAKGR 132
+++ Q+LL+QCV S +GR
Sbjct: 370 QQIHSAQYLLQQCVRNSTQGR 390
>Z81050-10|CAB02860.1| 329|Caenorhabditis elegans Hypothetical
protein C50B6.12 protein.
Length = 329
Score = 25.4 bits (53), Expect = 5.8
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = +2
Query: 44 GSLLFKITDAIARPDLHN 97
G ++F +T+ I+RP +HN
Sbjct: 48 GCIIFDLTEFISRPHIHN 65
>U64600-1|AAK39203.1| 500|Caenorhabditis elegans Hypothetical
protein C33D12.2 protein.
Length = 500
Score = 25.4 bits (53), Expect = 5.8
Identities = 14/64 (21%), Positives = 29/64 (45%)
Frame = -1
Query: 264 TTALY*IVYIIVSSTDQQLRFSG*TRGLSSVPLEAMCSPICERTILNASALIIWSLLCKS 85
T + Y + I S T+Q+ R +G + + +C+ + ++N ++ L S
Sbjct: 167 TLSPYELQLYIASGTEQEKRDAGRILPIRKKGNQLLCTLLIGNVVVNVGVSLLMDQLVGS 226
Query: 84 GLAI 73
G A+
Sbjct: 227 GFAV 230
>L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family
protein 3 protein.
Length = 3343
Score = 25.4 bits (53), Expect = 5.8
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = +2
Query: 44 GSLLFKITDAIARP 85
GSL F ITDA ARP
Sbjct: 3096 GSLTFSITDAYARP 3109
>AF038604-2|AAB92013.1| 468|Caenorhabditis elegans Hypothetical
protein B0546.3 protein.
Length = 468
Score = 25.4 bits (53), Expect = 5.8
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -1
Query: 141 ERTIL-NASALIIWSLLCKSGLAIASVILNNKDPL 40
ERT++ +A IIW L + LAI + I N + L
Sbjct: 124 ERTLMAEDTAAIIWETLQRFNLAIVASIQGNNESL 158
>U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated
protein 68 protein.
Length = 5079
Score = 25.0 bits (52), Expect = 7.7
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -1
Query: 135 TILNASALIIWSLLCKSGLAIASVILNNKD 46
T L S + WS+LC + I SV + KD
Sbjct: 1620 TALKLSEVRGWSVLCNDPVRIMSVYIPEKD 1649
>D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine receptor
protein.
Length = 5071
Score = 25.0 bits (52), Expect = 7.7
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -1
Query: 135 TILNASALIIWSLLCKSGLAIASVILNNKD 46
T L S + WS+LC + I SV + KD
Sbjct: 1741 TALKLSEVRGWSVLCNDPVRIMSVYIPEKD 1770
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,241,770
Number of Sequences: 27780
Number of extensions: 112290
Number of successful extensions: 229
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 238114316
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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