Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11l02
         (720 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    33   0.041
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    29   0.67 
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    28   1.2  
SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2 |Schizos...    27   2.0  
SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces p...    27   2.0  
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc...    27   2.7  
SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase...    27   3.6  
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    25   8.2  
SPAC8F11.06 |||nuclear envelope protein |Schizosaccharomyces pom...    25   8.2  

>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 33.1 bits (72), Expect = 0.041
 Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
 Frame = +1

Query: 436 RKGSGPKSETSEERAA--RLAKMSAYAAQRLANESPEQRATRLKRMSEYA----AKRLSS 597
           R+   P      ERAA  R  K  A  A+RL   + E++  RLK+  E A     KRL  
Sbjct: 695 RRNVDPMVSELSERAAQERERKEQAKEAKRLKKLAKEEK--RLKKKEEKARKAEEKRLQK 752

Query: 598 ETREQRAIRLARMSAYAARRLANETP 675
           E R + A +++R SA+A + +AN  P
Sbjct: 753 E-RAKYAKQMSRESAHADQAIANTGP 777


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 29.1 bits (62), Expect = 0.67
 Identities = 30/127 (23%), Positives = 52/127 (40%), Gaps = 7/127 (5%)
 Frame = +1

Query: 346 EQETLNTVEPVDMIQEMDPLSLLEPKARRRRKGSGPKSETSEERAARLAKMSAYAAQRLA 525
           + + L  +E  +  ++   L  +  K ++R K    K    EER  R A+  A  A + A
Sbjct: 569 QAKLLEEIEEENKRKQERELKKIREKEKKRDKKKQLKLAKEEERQRREAERLAEQAAQKA 628

Query: 526 NESPEQRATR-------LKRMSEYAAKRLSSETREQRAIRLARMSAYAARRLANETPAQR 684
            E+  Q   R       LKR  E   + L  + RE++  +  R      ++   E   ++
Sbjct: 629 LEAKRQEEARKKREEQRLKREQEKKQQELERQKREEKQKQKEREK--KLKKQQQEADREK 686

Query: 685 QARLLRM 705
            AR  R+
Sbjct: 687 MAREQRL 693


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1210

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
 Frame = -2

Query: 638 DILANLIALCSLVSD-ESLLAAYSDIRFSLVARCSGDSFASLCAAYAD--ILASRAALSS 468
           D+L  LI+LC  +SD  S+L   S    + V   S     S+  A+    + AS A +  
Sbjct: 541 DVLNELISLCDSLSDYRSILLLISLFFLTSVQTASSSQQISMFKAFRKTYLFASNAGIHI 600

Query: 467 DVSLFGPEPFLRLRALGSNND 405
           +   + P     L+ +GS+ +
Sbjct: 601 NAPYWDPFMITDLKFIGSSEN 621


>SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 980

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/54 (24%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
 Frame = +1

Query: 529 ESPEQRATRLKRM-SEYAAKRLSSETREQRAIRLARMSAYAARRLANETPAQRQ 687
           E   Q+A +L++  ++ AAK+   E R+ +  + A++++  A  +   TP +++
Sbjct: 31  ERERQKAAKLEKYHAKLAAKKAKEEARKPKLDKKAKIASPVAEYVEKTTPGEKK 84


>SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 521

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +1

Query: 430 RRRKGSGPKSETSEERAARLAKMSAYAAQRLANESPEQRATRLKRMS 570
           ++ KG+G   ET EE+ AR  K     A++  ++ P+    R  + S
Sbjct: 471 KQGKGNGRAKETPEEKRARKKKTKEDKAEKRKSKIPKYEKKRKLKQS 517


>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
           Prp22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1168

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
 Frame = +1

Query: 499 SAYAAQRLANESPE--QRATRLKRMSEYAAKRLSSETREQRAIRLARMSAY-----AARR 657
           +A   Q LAN+  E  Q+  +LK   E   + LS   ++  +    R  A      AAR+
Sbjct: 417 AAMQGQILANDRREIRQKEAKLKSEQEMEKQDLSLSWQDTMSNPQDRKFAQDVRDSAARQ 476

Query: 658 LANETPAQRQA 690
           L +ETP+ RQA
Sbjct: 477 LTSETPSWRQA 487


>SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 444

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 22/68 (32%), Positives = 30/68 (44%)
 Frame = -2

Query: 632 LANLIALCSLVSDESLLAAYSDIRFSLVARCSGDSFASLCAAYADILASRAALSSDVSLF 453
           +A  + L +L    +LL +YS    SL   C+GDS A L     D       LS D +  
Sbjct: 195 VAASLLLPALSGSCALLTSYSAKSKSLQVACTGDSRAVLGECTPDGSWEAIPLSRDQTGM 254

Query: 452 GPEPFLRL 429
            P+   RL
Sbjct: 255 NPDEASRL 262


>SPBC17D11.05 |tif32||translation initiation factor
           eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = +1

Query: 508 AAQRLANESPEQRATRLKRMSEYAAKRLSSETREQRAIRLARMSAYAARRLANETPAQ 681
           AAQR   +  E  A  L+   E   +      RE+ AIR+       A++LA E  A+
Sbjct: 586 AAQRALKQKQESEAESLRVQEEINKRNAERIRREKEAIRINE-----AKKLAEELKAK 638


>SPAC8F11.06 |||nuclear envelope protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 297

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +1

Query: 361 NTVEPVDMIQEMDPLSLLEPKARRRRKGSGPKSETSE--ERAARLAKMS 501
           N  EP+D+    D  +L +   RR+ + S P S +++   R   L K S
Sbjct: 40  NDPEPMDISMSPDEKNLKKSTVRRKLRKSKPNSSSNQVSSRTRALTKRS 88


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,790,299
Number of Sequences: 5004
Number of extensions: 54149
Number of successful extensions: 134
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)