Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11k24
         (736 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyce...    54   2e-08
SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|c...    47   2e-06
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom...    29   0.91 
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    27   2.1  
SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At...    26   4.8  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    26   4.8  
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo...    26   4.8  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    26   6.4  
SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr...    25   8.5  
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    25   8.5  
SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        25   8.5  

>SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 469

 Score = 54.4 bits (125), Expect = 2e-08
 Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 3/100 (3%)
 Frame = +2

Query: 377 INYGHSQWGFNNWSWSVTKQELDFIDFN--NGKYCAGVVAFVSIKVKSFDIYRENIGYAT 550
           I   +  +GFN WS S+    +DF+D N  NG+   G+   V + +K    Y E+IGY +
Sbjct: 62  IELANEIFGFNGWSSSIRSINVDFMDENKENGRISLGLSVIVRVTIKD-GAYHEDIGYGS 120

Query: 551 -SFAATKGFAIYKSRKCAVTNALRETLLSFGGSVAADLID 667
                 K  A  K +K   T+AL+  L +FG S+   + D
Sbjct: 121 IDNCRGKASAFEKCKKEGTTDALKRALRNFGNSLGNCMYD 160


>SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 371

 Score = 47.2 bits (107), Expect = 2e-06
 Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 2/99 (2%)
 Frame = +2

Query: 377 INYGHSQWGFNNWSWSVTKQELDFI-DFNNGKYCAGVVAFVSIKVKSFDIYRENIGYAT- 550
           I   +  +GFN WS S+    +D++ +    K+  G+   V + +K    + E++GY + 
Sbjct: 54  IELANEIFGFNGWSSSIQDIHVDYVEETKEKKFNVGISVIVRVTLKD-GSFHEDVGYGSI 112

Query: 551 SFAATKGFAIYKSRKCAVTNALRETLLSFGGSVAADLID 667
                K  A  K +K   T+AL+  L +FG S+   L D
Sbjct: 113 ENCRVKALAYEKCKKEGTTDALKRALRNFGSSMGNCLYD 151


>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 28.7 bits (61), Expect = 0.91
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +3

Query: 423 VSPNKNWISSTSTTGSIAPASSPLYR 500
           VSPNK WI+++S+ G+I   S+  +R
Sbjct: 62  VSPNKRWIATSSSDGTIKIWSALTFR 87


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +2

Query: 236 HTSKMQRKPGFPVTNCNIKM-PDCSPNLPNPDNMLEDDHEQHQRRQQLINY 385
           H  +  + P    TN ++ + PD SP L + + + +DD  + Q      NY
Sbjct: 282 HNRRKHKLPLNATTNNSVVLTPDTSPLLDSDEVVSDDDSNEQQTMMMKFNY 332


>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +2

Query: 656 DLIDLLENKTESVLIGTESHSENNLNI 736
           D+ DL +N+T SV  GT SH+ N  N+
Sbjct: 116 DISDLSKNQTLSVSDGTHSHAINFNNM 142


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +3

Query: 405 STIGAGVSPNKNWISSTSTTGSIAPASSPLY 497
           S+     S N     ST+TTGS   +SSP Y
Sbjct: 265 SSFTPSYSTNLTTTGSTTTTGSATVSSSPFY 295


>SPBC1683.09c |frp1||ferric-chelate reductase
           Frp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 564

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = -1

Query: 310 WGAVGHFYIAISDWEAWFPLHLGSVEAVPTQ*NSINFLVSHRKFIKTVFRRI 155
           WGA  H YI I     W  +H  ++ +VP+      F+     F K + +++
Sbjct: 298 WGAGNHMYINIPSLSYW-QIHPFTIASVPSDDFIELFVAVRAGFTKRLAKKV 348


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +2

Query: 362 RRQQLINYGHSQWGFN 409
           +++Q+INY +S WG N
Sbjct: 7   KKKQIINYANSNWGQN 22


>SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 454

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -2

Query: 522 ISKLFTLIDTKATTPAQYFPLLKSMKSNSCLVTLQLQ 412
           + K+ +LID K +   ++FPLL   K     +TLQ++
Sbjct: 53  VPKIRSLIDEKESLKNEFFPLLSLKKE----ITLQIE 85


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +3

Query: 432 NKNWISSTSTTGSIAPASSPLYRSK 506
           N++W+   +TT S++  +SP  + K
Sbjct: 664 NRDWVQPVNTTSSVSAFASPRIKPK 688


>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -3

Query: 86  TFSVSTNYFP*LIFSVFVYYL-CHMVRNL 3
           TFS  TN+FP   F +F+  +  H V+ L
Sbjct: 144 TFSTHTNFFPRHTFPIFIARVSLHFVKQL 172


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,993,891
Number of Sequences: 5004
Number of extensions: 60447
Number of successful extensions: 173
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)