Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11k24
(736 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U12134-1|AAA85793.1| 418|Homo sapiens RAD52 protein. 85 2e-16
L33262-1|AAB05203.1| 418|Homo sapiens protein ( Homo sapiens DN... 85 2e-16
BC104017-1|AAI04018.1| 399|Homo sapiens RAD52 protein protein. 85 2e-16
BC104015-1|AAI04016.1| 399|Homo sapiens RAD52 protein protein. 85 2e-16
AY540753-1|AAT44403.1| 418|Homo sapiens rhabdomyosarcoma antige... 85 2e-16
AY527412-1|AAS00097.1| 418|Homo sapiens RAD52 homolog (S. cerev... 85 2e-16
U27516-1|AAA87554.1| 419|Homo sapiens recombination protein RAD... 83 1e-15
AF125950-1|AAD24577.1| 226|Homo sapiens DNA repair protein RAD5... 77 7e-14
AF187983-2|AAF05531.1| 76|Homo sapiens RAD52 protein. 66 9e-11
AF187983-1|AAF05532.1| 126|Homo sapiens RAD52 beta isoform prot... 60 8e-09
BC114954-1|AAI14955.1| 121|Homo sapiens RAD52 protein protein. 58 3e-08
AF125949-1|AAD24576.1| 139|Homo sapiens DNA repair protein RAD5... 58 3e-08
AF187983-3|AAF05533.1| 52|Homo sapiens RAD52 gamma isoform pro... 41 0.004
>U12134-1|AAA85793.1| 418|Homo sapiens RAD52 protein.
Length = 418
Score = 85.4 bits (202), Expect = 2e-16
Identities = 39/100 (39%), Positives = 65/100 (65%), Gaps = 1/100 (1%)
Frame = +2
Query: 371 QLINYGHSQWGFNNWSWSVTKQELDFIDFNNGKYCAGVVAFVSIKVKSFDIYRENIGYAT 550
++IN + +G+N W+ S+T+Q +DF+D NNGK+ GV AFV +++K Y E++GY
Sbjct: 70 RVINLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGVCAFVRVQLKD-GSYHEDVGYGV 128
Query: 551 SFA-ATKGFAIYKSRKCAVTNALRETLLSFGGSVAADLID 667
S +K ++ K+RK AVT+ L+ L SFG ++ ++D
Sbjct: 129 SEGLKSKALSLEKARKEAVTDGLKRALRSFGNALGNCILD 168
>L33262-1|AAB05203.1| 418|Homo sapiens protein ( Homo sapiens DNA
repair and recombination homologue (RAD52) gene,
complete cds. ).
Length = 418
Score = 85.4 bits (202), Expect = 2e-16
Identities = 39/100 (39%), Positives = 65/100 (65%), Gaps = 1/100 (1%)
Frame = +2
Query: 371 QLINYGHSQWGFNNWSWSVTKQELDFIDFNNGKYCAGVVAFVSIKVKSFDIYRENIGYAT 550
++IN + +G+N W+ S+T+Q +DF+D NNGK+ GV AFV +++K Y E++GY
Sbjct: 70 RVINLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGVCAFVRVQLKD-GSYHEDVGYGV 128
Query: 551 SFA-ATKGFAIYKSRKCAVTNALRETLLSFGGSVAADLID 667
S +K ++ K+RK AVT+ L+ L SFG ++ ++D
Sbjct: 129 SEGLKSKALSLEKARKEAVTDGLKRALRSFGNALGNCILD 168
>BC104017-1|AAI04018.1| 399|Homo sapiens RAD52 protein protein.
Length = 399
Score = 85.4 bits (202), Expect = 2e-16
Identities = 39/100 (39%), Positives = 65/100 (65%), Gaps = 1/100 (1%)
Frame = +2
Query: 371 QLINYGHSQWGFNNWSWSVTKQELDFIDFNNGKYCAGVVAFVSIKVKSFDIYRENIGYAT 550
++IN + +G+N W+ S+T+Q +DF+D NNGK+ GV AFV +++K Y E++GY
Sbjct: 70 RVINLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGVCAFVRVQLKD-GSYHEDVGYGV 128
Query: 551 SFA-ATKGFAIYKSRKCAVTNALRETLLSFGGSVAADLID 667
S +K ++ K+RK AVT+ L+ L SFG ++ ++D
Sbjct: 129 SEGLKSKALSLEKARKEAVTDGLKRALRSFGNALGNCILD 168
>BC104015-1|AAI04016.1| 399|Homo sapiens RAD52 protein protein.
Length = 399
Score = 85.4 bits (202), Expect = 2e-16
Identities = 39/100 (39%), Positives = 65/100 (65%), Gaps = 1/100 (1%)
Frame = +2
Query: 371 QLINYGHSQWGFNNWSWSVTKQELDFIDFNNGKYCAGVVAFVSIKVKSFDIYRENIGYAT 550
++IN + +G+N W+ S+T+Q +DF+D NNGK+ GV AFV +++K Y E++GY
Sbjct: 70 RVINLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGVCAFVRVQLKD-GSYHEDVGYGV 128
Query: 551 SFA-ATKGFAIYKSRKCAVTNALRETLLSFGGSVAADLID 667
S +K ++ K+RK AVT+ L+ L SFG ++ ++D
Sbjct: 129 SEGLKSKALSLEKARKEAVTDGLKRALRSFGNALGNCILD 168
>AY540753-1|AAT44403.1| 418|Homo sapiens rhabdomyosarcoma antigen
MU-RMS-40.23 protein.
Length = 418
Score = 85.4 bits (202), Expect = 2e-16
Identities = 39/100 (39%), Positives = 65/100 (65%), Gaps = 1/100 (1%)
Frame = +2
Query: 371 QLINYGHSQWGFNNWSWSVTKQELDFIDFNNGKYCAGVVAFVSIKVKSFDIYRENIGYAT 550
++IN + +G+N W+ S+T+Q +DF+D NNGK+ GV AFV +++K Y E++GY
Sbjct: 70 RVINLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGVCAFVRVQLKD-GSYHEDVGYGV 128
Query: 551 SFA-ATKGFAIYKSRKCAVTNALRETLLSFGGSVAADLID 667
S +K ++ K+RK AVT+ L+ L SFG ++ ++D
Sbjct: 129 SEGLKSKALSLEKARKEAVTDGLKRALRSFGNALGNCILD 168
>AY527412-1|AAS00097.1| 418|Homo sapiens RAD52 homolog (S.
cerevisiae) protein.
Length = 418
Score = 85.4 bits (202), Expect = 2e-16
Identities = 39/100 (39%), Positives = 65/100 (65%), Gaps = 1/100 (1%)
Frame = +2
Query: 371 QLINYGHSQWGFNNWSWSVTKQELDFIDFNNGKYCAGVVAFVSIKVKSFDIYRENIGYAT 550
++IN + +G+N W+ S+T+Q +DF+D NNGK+ GV AFV +++K Y E++GY
Sbjct: 70 RVINLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGVCAFVRVQLKD-GSYHEDVGYGV 128
Query: 551 SFA-ATKGFAIYKSRKCAVTNALRETLLSFGGSVAADLID 667
S +K ++ K+RK AVT+ L+ L SFG ++ ++D
Sbjct: 129 SEGLKSKALSLEKARKEAVTDGLKRALRSFGNALGNCILD 168
>U27516-1|AAA87554.1| 419|Homo sapiens recombination protein RAD52
protein.
Length = 419
Score = 83.0 bits (196), Expect = 1e-15
Identities = 38/100 (38%), Positives = 64/100 (64%), Gaps = 1/100 (1%)
Frame = +2
Query: 371 QLINYGHSQWGFNNWSWSVTKQELDFIDFNNGKYCAGVVAFVSIKVKSFDIYRENIGYAT 550
++IN + +G+N W+ S+T+Q +DF+D N GK+ GV AFV +++K Y E++GY
Sbjct: 70 RVINLANEMFGYNGWAHSITQQNVDFVDLNKGKFYVGVCAFVRVQLKD-GSYHEDVGYGV 128
Query: 551 SFA-ATKGFAIYKSRKCAVTNALRETLLSFGGSVAADLID 667
S +K ++ K+RK AVT+ L+ L SFG ++ ++D
Sbjct: 129 SEGLKSKALSLEKARKEAVTDGLKRALRSFGNALGNCILD 168
>AF125950-1|AAD24577.1| 226|Homo sapiens DNA repair protein RAD52
beta isoform protein.
Length = 226
Score = 77.0 bits (181), Expect = 7e-14
Identities = 35/87 (40%), Positives = 57/87 (65%), Gaps = 1/87 (1%)
Frame = +2
Query: 371 QLINYGHSQWGFNNWSWSVTKQELDFIDFNNGKYCAGVVAFVSIKVKSFDIYRENIGYAT 550
++IN + +G+N W+ S+T+Q +DF+D NNGK+ GV AFV +++K Y E++GY
Sbjct: 70 RVINLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGVCAFVRVQLKD-GSYHEDVGYGV 128
Query: 551 SFA-ATKGFAIYKSRKCAVTNALRETL 628
S +K ++ K+RK AVT+ L+ L
Sbjct: 129 SEGLKSKALSLEKARKEAVTDGLKRAL 155
>AF187983-2|AAF05531.1| 76|Homo sapiens RAD52 protein.
Length = 76
Score = 66.5 bits (155), Expect = 9e-11
Identities = 32/76 (42%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Frame = +2
Query: 425 VTKQELDFIDFNNGKYCAGVVAFVSIKVKSFDIYRENIGYATSFA-ATKGFAIYKSRKCA 601
+T+Q +DF+D NNGK+ GV AFV +++K Y E++GY S +K ++ K+RK A
Sbjct: 1 ITQQNVDFVDLNNGKFYVGVCAFVRVQLKD-GSYHEDVGYGVSEGLKSKALSLEKARKEA 59
Query: 602 VTNALRETLLSFGGSV 649
VT+ L+ L SFG ++
Sbjct: 60 VTDGLKRALRSFGNAL 75
>AF187983-1|AAF05532.1| 126|Homo sapiens RAD52 beta isoform
protein.
Length = 126
Score = 60.1 bits (139), Expect = 8e-09
Identities = 29/69 (42%), Positives = 45/69 (65%), Gaps = 1/69 (1%)
Frame = +2
Query: 425 VTKQELDFIDFNNGKYCAGVVAFVSIKVKSFDIYRENIGYATSFA-ATKGFAIYKSRKCA 601
+T+Q +DF+D NNGK+ GV AFV +++K Y E++GY S +K ++ K+RK A
Sbjct: 1 ITQQNVDFVDLNNGKFYVGVCAFVRVQLKD-GSYHEDVGYGVSEGLKSKALSLEKARKEA 59
Query: 602 VTNALRETL 628
VT+ L+ L
Sbjct: 60 VTDGLKRAL 68
>BC114954-1|AAI14955.1| 121|Homo sapiens RAD52 protein protein.
Length = 121
Score = 58.0 bits (134), Expect = 3e-08
Identities = 21/47 (44%), Positives = 35/47 (74%)
Frame = +2
Query: 371 QLINYGHSQWGFNNWSWSVTKQELDFIDFNNGKYCAGVVAFVSIKVK 511
++IN + +G+N W+ S+T+Q +DF+D NNGK+ GV AFV +++K
Sbjct: 70 RVINLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGVCAFVRVQLK 116
>AF125949-1|AAD24576.1| 139|Homo sapiens DNA repair protein RAD52
gamma isoform protein.
Length = 139
Score = 58.0 bits (134), Expect = 3e-08
Identities = 21/47 (44%), Positives = 35/47 (74%)
Frame = +2
Query: 371 QLINYGHSQWGFNNWSWSVTKQELDFIDFNNGKYCAGVVAFVSIKVK 511
++IN + +G+N W+ S+T+Q +DF+D NNGK+ GV AFV +++K
Sbjct: 70 RVINLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGVCAFVRVQLK 116
>AF187983-3|AAF05533.1| 52|Homo sapiens RAD52 gamma isoform
protein.
Length = 52
Score = 41.1 bits (92), Expect = 0.004
Identities = 15/29 (51%), Positives = 23/29 (79%)
Frame = +2
Query: 425 VTKQELDFIDFNNGKYCAGVVAFVSIKVK 511
+T+Q +DF+D NNGK+ GV AFV +++K
Sbjct: 1 ITQQNVDFVDLNNGKFYVGVCAFVRVQLK 29
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,258,776
Number of Sequences: 237096
Number of extensions: 1973031
Number of successful extensions: 4206
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 4012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4198
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8735159784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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