Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11k24
         (736 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003385-2|AAB54249.1|  773|Caenorhabditis elegans Hypothetical ...    31   0.64 
AL132943-3|CAB81974.1|  345|Caenorhabditis elegans Hypothetical ...    30   2.0  
Z75545-6|CAA99888.3|  649|Caenorhabditis elegans Hypothetical pr...    29   3.4  
AL008986-2|CAA15621.3|  649|Caenorhabditis elegans Hypothetical ...    29   3.4  
U41992-6|AAA83357.1|  270|Caenorhabditis elegans Hypothetical pr...    29   4.5  
U80842-2|AAB37948.1|  322|Caenorhabditis elegans Serpentine rece...    28   6.0  
AF038615-7|AAB94147.1|  479|Caenorhabditis elegans Hypothetical ...    28   6.0  

>AF003385-2|AAB54249.1|  773|Caenorhabditis elegans Hypothetical
           protein R08F11.7 protein.
          Length = 773

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +3

Query: 420 GVSPNKNW--ISSTSTTGSIAPASSPLYRSK*RVSIYTGKILATPL 551
           G+SP   W  +SST T  ++A A   +Y     + +YTG ++ TPL
Sbjct: 638 GLSPVDTWNDLSSTFTAANLA-ALKTVYADPADIDLYTGLVMETPL 682


>AL132943-3|CAB81974.1|  345|Caenorhabditis elegans Hypothetical
           protein Y116F11B.6 protein.
          Length = 345

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/57 (22%), Positives = 29/57 (50%)
 Frame = +2

Query: 284 NIKMPDCSPNLPNPDNMLEDDHEQHQRRQQLINYGHSQWGFNNWSWSVTKQELDFID 454
           ++K+     NL      L++ H+++  R++L   G+ + G     WS TK + + ++
Sbjct: 233 DVKLKKIEKNLKESRKELKEAHQEYLNRKELAKKGNKREGTYMSHWSRTKTKTNLLE 289


>Z75545-6|CAA99888.3|  649|Caenorhabditis elegans Hypothetical
           protein H37N21.1 protein.
          Length = 649

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 19/54 (35%), Positives = 25/54 (46%)
 Frame = -3

Query: 308 GSSRAFLYCN**LGSLVSVASWKCGSGANAIKLNQFFSFSSKIHQNSLSSNTVF 147
           GS  AFL      GS +S+ +WK  +      LN   S    I   +L+ NTVF
Sbjct: 133 GSMSAFLQRTRKAGSSLSIKAWKKWTTQILSALNYLHSSDPPIIHGNLTCNTVF 186


>AL008986-2|CAA15621.3|  649|Caenorhabditis elegans Hypothetical
           protein H37N21.1 protein.
          Length = 649

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 19/54 (35%), Positives = 25/54 (46%)
 Frame = -3

Query: 308 GSSRAFLYCN**LGSLVSVASWKCGSGANAIKLNQFFSFSSKIHQNSLSSNTVF 147
           GS  AFL      GS +S+ +WK  +      LN   S    I   +L+ NTVF
Sbjct: 133 GSMSAFLQRTRKAGSSLSIKAWKKWTTQILSALNYLHSSDPPIIHGNLTCNTVF 186


>U41992-6|AAA83357.1|  270|Caenorhabditis elegans Hypothetical
           protein F32E10.2 protein.
          Length = 270

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 9/36 (25%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
 Frame = +2

Query: 326 DNMLEDDHEQHQRRQQLINYG----HSQWGFNNWSW 421
           + + ED+ +  ++R++++        S+WGF +W W
Sbjct: 234 EEIQEDEDDDDEQREEVVTTAPVETKSRWGFGSWKW 269


>U80842-2|AAB37948.1|  322|Caenorhabditis elegans Serpentine
           receptor, class i protein51 protein.
          Length = 322

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +2

Query: 455 FNNGKYCAGVVAFVSIKVKSFDIYRENI-GYATSFAATKGFAIYK 586
           F    +CA  V     + +  D  RE+  GYA+ FA  K FAIY+
Sbjct: 146 FTFSLFCAAAVN----REEQMDYVREHYPGYASEFAQLKNFAIYR 186


>AF038615-7|AAB94147.1|  479|Caenorhabditis elegans Hypothetical
           protein R02D3.7 protein.
          Length = 479

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +2

Query: 281 CNIKMPDCSPNLPNPDNMLEDDHEQHQRRQQLIN 382
           CN+K P+CS    + D  L    ++H    Q  N
Sbjct: 186 CNLKCPECSSTSESLDEFLLHCRQEHMSHDQKFN 219


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,393,913
Number of Sequences: 27780
Number of extensions: 335879
Number of successful extensions: 1008
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1008
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)