Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11k23
         (196 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55374-8|AAB36868.3| 1538|Caenorhabditis elegans Uncoordinated p...    26   3.2  
U49956-1|AAO38615.1|  669|Caenorhabditis elegans Hypothetical pr...    26   3.2  
Z81077-4|CAB03071.3|  618|Caenorhabditis elegans Hypothetical pr...    26   4.3  
AF101318-6|AAC69348.2|  946|Caenorhabditis elegans Hypothetical ...    26   4.3  
Z83223-4|CAB05716.2|  534|Caenorhabditis elegans Hypothetical pr...    25   5.6  
U13875-13|AAA21156.2|  470|Caenorhabditis elegans Hypothetical p...    25   5.6  
AF024498-4|AAF39805.2|  319|Caenorhabditis elegans Serpentine re...    25   5.6  
Z81515-9|CAH04722.1| 2266|Caenorhabditis elegans Hypothetical pr...    25   7.4  
Z73974-7|CAL90892.1|  283|Caenorhabditis elegans Hypothetical pr...    25   7.4  
Z73974-6|CAL90891.1|  215|Caenorhabditis elegans Hypothetical pr...    25   7.4  
Z73974-5|CAA98272.1|  346|Caenorhabditis elegans Hypothetical pr...    25   7.4  
U52002-3|AAL02476.1| 1306|Caenorhabditis elegans Cadherin family...    25   7.4  
U52002-2|AAB37728.1| 1544|Caenorhabditis elegans Cadherin family...    25   7.4  
U39472-10|AAZ82853.1|  354|Caenorhabditis elegans Serpentine rec...    25   7.4  
U10081-1|AAA20841.1|  346|Caenorhabditis elegans CEH-22 homeopro...    25   7.4  
U10080-1|AAA20840.1|  346|Caenorhabditis elegans CEH-22 homeopro...    25   7.4  
AC006689-3|AAO21400.1|  310|Caenorhabditis elegans Hypothetical ...    25   9.8  
AC006689-2|AAF39970.2|  341|Caenorhabditis elegans Hypothetical ...    25   9.8  

>U55374-8|AAB36868.3| 1538|Caenorhabditis elegans Uncoordinated
            protein 2, isoform a protein.
          Length = 1538

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = +2

Query: 23   EIYVRRQNSLCPQKMSLFYLISFLLFHPNYCATKKYTNYTLYRGVPVNKSHLD 181
            ++ V   + LC QK+++  + + LL   NY A K  T       VP N S  D
Sbjct: 1432 DLVVPPNHELCFQKLTVGKIYAGLLILENYRARKSGTERQSNDSVPPNFSEND 1484


>U49956-1|AAO38615.1|  669|Caenorhabditis elegans Hypothetical
           protein M03A1.3 protein.
          Length = 669

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = -1

Query: 154 TSIQCVVCVFFGRAIVWMEEEKRN 83
           TS+  ++C+  G  ++++E E+RN
Sbjct: 592 TSVPTILCIATGFVVLYLESEQRN 615


>Z81077-4|CAB03071.3|  618|Caenorhabditis elegans Hypothetical
           protein F36A2.4 protein.
          Length = 618

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 12/48 (25%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -3

Query: 149 YTVCSLCIFWSRNSLDGRGETKSNRIKTFFGDKVNFDDV-HRFRAAKY 9
           Y + + C+ W R     +GE +++ ++  FGD  N +++  R R  ++
Sbjct: 183 YELWNKCLEWKRKR---KGEVEADPLQPMFGDDENEEEILDRVRLVRF 227


>AF101318-6|AAC69348.2|  946|Caenorhabditis elegans Hypothetical
           protein Y73C8C.8 protein.
          Length = 946

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +2

Query: 2   VEYIWQHEIYVRRQNSLCPQKMSLFYLISFLLFHPNYCATKKYTNYTLYRGVP 160
           V YI++H+ +V  Q ++C   +  F     L    +Y   ++ T  TL+  VP
Sbjct: 99  VPYIYKHDYFVVIQWAICVSPLRRFETEVALATIASYLKIRELTLPTLHEMVP 151


>Z83223-4|CAB05716.2|  534|Caenorhabditis elegans Hypothetical
           protein E01G4.4 protein.
          Length = 534

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = +2

Query: 8   YIWQHEIYVRRQNSLCPQKMSLF-YLISFLLFHPNYCATKKYTNYTLYRGVPVNKSH 175
           Y+ QH+   ++Q+    Q+   F +  +  +F P   A +    Y  Y G PV++ H
Sbjct: 84  YMMQHQQQHQQQHHYHQQQQQQFMFNANANVFVPRGHAQQPPAEYGFYNGPPVHQQH 140


>U13875-13|AAA21156.2|  470|Caenorhabditis elegans Hypothetical
           protein C26E6.2 protein.
          Length = 470

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +2

Query: 56  PQKMSLFYLISFLLFHPNYCATKKYTNYTLYRGVPVNKSHL 178
           P++++ FY   F   HPNYC   K  N +  +      SH+
Sbjct: 209 PEELA-FYEQDFSTLHPNYCHPVKSINRSYMQRKLSRASHV 248


>AF024498-4|AAF39805.2|  319|Caenorhabditis elegans Serpentine
           receptor, class x protein102 protein.
          Length = 319

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +2

Query: 47  SLCPQKMSLFYLISFLLFHPNYCATKKYTNYTLYRGVPVNKSHLDFFNS 193
           S C QKMS FYL+         C++K  +N  +  G  V+ + +   N+
Sbjct: 51  SFCKQKMSSFYLM---------CSSKTLSNMCILLGYVVHNAPITIMNN 90


>Z81515-9|CAH04722.1| 2266|Caenorhabditis elegans Hypothetical protein
            F26H11.2c protein.
          Length = 2266

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 4    RIYLAARNLCTSSKFTLSPKNVFILFDF 87
            R ++A+R    +SKF +  K  F+ F+F
Sbjct: 1683 RDFMASRGYLDTSKFMMQTKPTFLPFEF 1710


>Z73974-7|CAL90892.1|  283|Caenorhabditis elegans Hypothetical
           protein F29F11.5c protein.
          Length = 283

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -3

Query: 104 DGRGETKSNRIKTFFGDKVNFDDVHRFRAAKYI 6
           DG G+ K  + +  F     ++   RFR+ KY+
Sbjct: 119 DGTGKRKKRKRRVLFTKAQTYELERRFRSQKYL 151


>Z73974-6|CAL90891.1|  215|Caenorhabditis elegans Hypothetical
           protein F29F11.5b protein.
          Length = 215

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -3

Query: 104 DGRGETKSNRIKTFFGDKVNFDDVHRFRAAKYI 6
           DG G+ K  + +  F     ++   RFR+ KY+
Sbjct: 51  DGTGKRKKRKRRVLFTKAQTYELERRFRSQKYL 83


>Z73974-5|CAA98272.1|  346|Caenorhabditis elegans Hypothetical
           protein F29F11.5a protein.
          Length = 346

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -3

Query: 104 DGRGETKSNRIKTFFGDKVNFDDVHRFRAAKYI 6
           DG G+ K  + +  F     ++   RFR+ KY+
Sbjct: 182 DGTGKRKKRKRRVLFTKAQTYELERRFRSQKYL 214


>U52002-3|AAL02476.1| 1306|Caenorhabditis elegans Cadherin family
            protein 5, isoformb protein.
          Length = 1306

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 6/10 (60%), Positives = 10/10 (100%)
 Frame = -3

Query: 143  VCSLCIFWSR 114
            +C++C+FWSR
Sbjct: 1142 ICAVCVFWSR 1151


>U52002-2|AAB37728.1| 1544|Caenorhabditis elegans Cadherin family
            protein 5, isoforma protein.
          Length = 1544

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 6/10 (60%), Positives = 10/10 (100%)
 Frame = -3

Query: 143  VCSLCIFWSR 114
            +C++C+FWSR
Sbjct: 1286 ICAVCVFWSR 1295


>U39472-10|AAZ82853.1|  354|Caenorhabditis elegans Serpentine
           receptor, class a (alpha)protein 36 protein.
          Length = 354

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 71  LFYLISFLLFHPNYCATKKYTNYTLYRGV 157
           LFY +++ +FH  Y A     N++LYR +
Sbjct: 69  LFYCMNYYIFHDIYFAFT--MNWSLYRSI 95


>U10081-1|AAA20841.1|  346|Caenorhabditis elegans CEH-22
           homeoprotein protein.
          Length = 346

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -3

Query: 104 DGRGETKSNRIKTFFGDKVNFDDVHRFRAAKYI 6
           DG G+ K  + +  F     ++   RFR+ KY+
Sbjct: 182 DGTGKRKKRKRRVLFTKAQTYELERRFRSQKYL 214


>U10080-1|AAA20840.1|  346|Caenorhabditis elegans CEH-22
           homeoprotein protein.
          Length = 346

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -3

Query: 104 DGRGETKSNRIKTFFGDKVNFDDVHRFRAAKYI 6
           DG G+ K  + +  F     ++   RFR+ KY+
Sbjct: 182 DGTGKRKKRKRRVLFTKAQTYELERRFRSQKYL 214


>AC006689-3|AAO21400.1|  310|Caenorhabditis elegans Hypothetical
           protein T22E7.1b protein.
          Length = 310

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 113 NSLDGRGETKSNRIKTFFGDKVNF 42
           ++LDG  E KS+ ++ FF  K +F
Sbjct: 130 DALDGNMEEKSDMLRNFFHSKNSF 153


>AC006689-2|AAF39970.2|  341|Caenorhabditis elegans Hypothetical
           protein T22E7.1a protein.
          Length = 341

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 113 NSLDGRGETKSNRIKTFFGDKVNF 42
           ++LDG  E KS+ ++ FF  K +F
Sbjct: 130 DALDGNMEEKSDMLRNFFHSKNSF 153


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,988,259
Number of Sequences: 27780
Number of extensions: 92259
Number of successful extensions: 288
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 288
length of database: 12,740,198
effective HSP length: 44
effective length of database: 11,517,878
effective search space used: 230357560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)