Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11k20
         (475 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0092 + 11079185-11079589,11081319-11081409,11081507-110816...    29   1.4  
03_02_0607 + 9813510-9813628,9813724-9813898,9813993-9814058,981...    29   2.5  
05_07_0280 - 28920864-28920971,28921076-28921175,28921267-289213...    28   3.3  
05_03_0320 + 12353416-12353451,12353579-12353668,12353940-123540...    27   5.8  

>04_03_0092 +
           11079185-11079589,11081319-11081409,11081507-11081612,
           11081694-11081976,11082062-11082210,11083582-11083735,
           11083837-11084793
          Length = 714

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 10/40 (25%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +2

Query: 176 YRDDAIKHYDRSGFQVTWIRHG-VNYDDMKFTKPKATKIR 292
           + +DA+  Y+  G+   W+++G   YDD++    +A  ++
Sbjct: 249 FTEDALARYEALGWHTIWVKNGNTGYDDIRAAIKEAKAVK 288


>03_02_0607 +
           9813510-9813628,9813724-9813898,9813993-9814058,
           9815415-9815463,9815797-9815882,9815969-9816048,
           9816144-9816246,9816364-9816422,9816509-9816524
          Length = 250

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 197 HYDRSGFQVTWIRHGVNYDDMKFTK 271
           H +RSGF+  W R+ + +D+  FT+
Sbjct: 169 HKERSGFEGPWTRNPLQFDNSYFTE 193


>05_07_0280 -
           28920864-28920971,28921076-28921175,28921267-28921394,
           28922013-28922180,28922280-28922395,28922584-28922736,
           28922904-28923047,28923401-28924133
          Length = 549

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 16/46 (34%), Positives = 27/46 (58%)
 Frame = +1

Query: 202 RQIRFPSDLDKARRELR*YEVHEAESHKD*KRIRKTKGPYENRTNV 339
           R++  P DLD  RRE+  + +H    H++   I + +G YE+R +V
Sbjct: 124 RKLARPDDLDDVRREV--HIMHHLTGHRN---IVELRGAYEDRHSV 164


>05_03_0320 +
           12353416-12353451,12353579-12353668,12353940-12354026,
           12354156-12354224,12355179-12355313,12355746-12355826,
           12355908-12355979,12356071-12356131,12356234-12356336,
           12356448-12356543,12356620-12356666,12356747-12356871,
           12356962-12357036
          Length = 358

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = -3

Query: 407 LLNPKNSSSEFIVTFPRGSCRGTTFVLFS*GPLVFRILF 291
           L +P+N +   ++ FPRG   G   ++FS   ++F I+F
Sbjct: 197 LPHPQNVAEVLLINFPRGVIYGCGDLIFS-SHMIFTIVF 234


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,363,526
Number of Sequences: 37544
Number of extensions: 193570
Number of successful extensions: 419
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)