Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11k20
(475 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z50795-2|CAA90663.1| 618|Caenorhabditis elegans Hypothetical pr... 31 0.56
Z72502-3|CAA96593.2| 218|Caenorhabditis elegans Hypothetical pr... 28 3.9
AC006729-7|AAF60463.1| 157|Caenorhabditis elegans Hypothetical ... 27 5.2
U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five) in... 27 6.9
U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five) in... 27 6.9
U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five) in... 27 6.9
U39996-7|AAA81093.1| 1667|Caenorhabditis elegans Temporarily ass... 27 6.9
AF063007-6|AAC16427.2| 523|Caenorhabditis elegans Taf (tbp-asso... 27 6.9
AF045642-3|AAC02581.1| 588|Caenorhabditis elegans Hypothetical ... 27 6.9
>Z50795-2|CAA90663.1| 618|Caenorhabditis elegans Hypothetical
protein R166.2 protein.
Length = 618
Score = 30.7 bits (66), Expect = 0.56
Identities = 15/67 (22%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Frame = +2
Query: 155 KIYTVGTYRDDA---IKHYDRSGFQVTWIRHGVNYDD--MKFTKPKATKIRREYGKPKDL 319
+I+ + Y DD+ + +D + ++ W+R+G+ YDD + + I + + P L
Sbjct: 75 QIFDLYVYMDDSDLPFRQFDSAPEKLIWMRNGMKYDDWISGDNEDGSHTIHKNFPTPAAL 134
Query: 320 MKIERMW 340
++ + +W
Sbjct: 135 LRNDSLW 141
>Z72502-3|CAA96593.2| 218|Caenorhabditis elegans Hypothetical
protein C08B6.6 protein.
Length = 218
Score = 27.9 bits (59), Expect = 3.9
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +1
Query: 262 VHEAESHKD*KRIRKTKGPYENRTNVVPLH 351
++E SHK K G ++NR N++ H
Sbjct: 177 IYECPSHKQFSMNTKNSGKFQNRDNIISKH 206
>AC006729-7|AAF60463.1| 157|Caenorhabditis elegans Hypothetical
protein Y24D9A.6 protein.
Length = 157
Score = 27.5 bits (58), Expect = 5.2
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = -3
Query: 215 NRICRNVLSRHLCTCL 168
NR+ RNVL R LC CL
Sbjct: 93 NRVKRNVLDRCLCVCL 108
>U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform d protein.
Length = 2350
Score = 27.1 bits (57), Expect = 6.9
Identities = 19/82 (23%), Positives = 42/82 (51%)
Frame = +1
Query: 142 HRQIKDLYSRHVQR*RDKTLRQIRFPSDLDKARRELR*YEVHEAESHKD*KRIRKTKGPY 321
+++ KD ++RH+ R K +I+ DL+K + A ++ + ++R+T Y
Sbjct: 772 YQKQKDEHARHLFDIRHKLETEIKGRQDLEK----------NGARNNDELDKLRQTISDY 821
Query: 322 ENRTNVVPLHDPRGNVTINSEE 387
E++ N++ H+ + TI +
Sbjct: 822 ESQINLLRRHNDELDTTIKGHQ 843
>U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform b protein.
Length = 2117
Score = 27.1 bits (57), Expect = 6.9
Identities = 19/82 (23%), Positives = 42/82 (51%)
Frame = +1
Query: 142 HRQIKDLYSRHVQR*RDKTLRQIRFPSDLDKARRELR*YEVHEAESHKD*KRIRKTKGPY 321
+++ KD ++RH+ R K +I+ DL+K + A ++ + ++R+T Y
Sbjct: 845 YQKQKDEHARHLFDIRHKLETEIKGRQDLEK----------NGARNNDELDKLRQTISDY 894
Query: 322 ENRTNVVPLHDPRGNVTINSEE 387
E++ N++ H+ + TI +
Sbjct: 895 ESQINLLRRHNDELDTTIKGHQ 916
>U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform a protein.
Length = 2396
Score = 27.1 bits (57), Expect = 6.9
Identities = 19/82 (23%), Positives = 42/82 (51%)
Frame = +1
Query: 142 HRQIKDLYSRHVQR*RDKTLRQIRFPSDLDKARRELR*YEVHEAESHKD*KRIRKTKGPY 321
+++ KD ++RH+ R K +I+ DL+K + A ++ + ++R+T Y
Sbjct: 845 YQKQKDEHARHLFDIRHKLETEIKGRQDLEK----------NGARNNDELDKLRQTISDY 894
Query: 322 ENRTNVVPLHDPRGNVTINSEE 387
E++ N++ H+ + TI +
Sbjct: 895 ESQINLLRRHNDELDTTIKGHQ 916
>U39996-7|AAA81093.1| 1667|Caenorhabditis elegans Temporarily
assigned gene nameprotein 177 protein.
Length = 1667
Score = 27.1 bits (57), Expect = 6.9
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -1
Query: 340 PHSFYFHKVLWFSVFSSNLCGFRLRELHIIVVHAVP 233
P SF+F + WFS+F + CGF +H I+ + P
Sbjct: 576 PLSFFFFVISWFSLFFA--CGFPF-PIHSILKYFNP 608
>AF063007-6|AAC16427.2| 523|Caenorhabditis elegans Taf
(tbp-associated transcriptionfactor) family protein 4
protein.
Length = 523
Score = 27.1 bits (57), Expect = 6.9
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +1
Query: 190 DKTLRQIRFPSDLDKARRELR*YEVHEAES 279
D RQ+RF DLD+ ELR E E ES
Sbjct: 392 DDVKRQLRFLEDLDRQEEELR--ESREKES 419
>AF045642-3|AAC02581.1| 588|Caenorhabditis elegans Hypothetical
protein C17H12.2 protein.
Length = 588
Score = 27.1 bits (57), Expect = 6.9
Identities = 17/68 (25%), Positives = 30/68 (44%)
Frame = +2
Query: 164 TVGTYRDDAIKHYDRSGFQVTWIRHGVNYDDMKFTKPKATKIRREYGKPKDLMKIERMWC 343
T+ R +A K+ S + I HG + +K + A K Y +L+ R+W
Sbjct: 300 TLNGDRINATKYILMSNLRAPTIEHGATLESVKPLENLARKSELCYTGHSNLLFPSRLWQ 359
Query: 344 PYMTPVEM 367
+ TP ++
Sbjct: 360 DWDTPTKL 367
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,214,157
Number of Sequences: 27780
Number of extensions: 176958
Number of successful extensions: 432
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 432
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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