Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11k20
         (475 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    22   2.9  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    22   2.9  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   8.9  

>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 212 RICRNVLSRHLCTCLLYKSLICR 144
           R C NV+ + LC  +     +CR
Sbjct: 52  RFCPNVVPKPLCIKICAPGCVCR 74


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 212 RICRNVLSRHLCTCLLYKSLICR 144
           R C NV+ + LC  +     +CR
Sbjct: 52  RFCPNVVPKPLCIKICAPGCVCR 74


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 330 SIFIRSFGFPYSLLIFVAFG 271
           S+F+ +FG  + L I   FG
Sbjct: 173 SMFVHTFGAYFGLAISFVFG 192


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,558
Number of Sequences: 438
Number of extensions: 2219
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12805416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)