Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11k18
(729 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-tr... 83 3e-17
SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans i... 75 8e-15
SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans... 62 1e-10
SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-tr... 45 1e-05
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 43 4e-05
SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans... 40 5e-04
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 39 8e-04
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 38 0.001
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 36 0.006
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 36 0.008
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-... 34 0.024
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 33 0.032
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid... 31 0.22
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 29 0.51
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 29 0.68
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa... 29 0.90
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 29 0.90
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 28 1.2
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 28 1.6
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 27 2.7
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 27 3.6
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 26 6.3
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 25 8.4
>SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 162
Score = 83.4 bits (197), Expect = 3e-17
Identities = 34/55 (61%), Positives = 44/55 (80%)
Frame = +2
Query: 560 YFDISVNKQEIGRIIMMLRADIVPKTAENFRSLCTHEKGFGYQGSSFHRIIPEFM 724
+FD+ N Q +GRI+ L D+VPKTA NFR+LCT EKG+GY GS+FHR+IP+FM
Sbjct: 5 FFDVIANGQPLGRIVFKLFDDVVPKTAANFRALCTGEKGYGYAGSTFHRVIPQFM 59
>SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 201
Score = 75.4 bits (177), Expect = 8e-15
Identities = 33/56 (58%), Positives = 41/56 (73%)
Frame = +2
Query: 557 VYFDISVNKQEIGRIIMMLRADIVPKTAENFRSLCTHEKGFGYQGSSFHRIIPEFM 724
VYFD+ + +GR+ + L VPKTAENFR+L T EKGFGY+GS FHR+IP FM
Sbjct: 29 VYFDLQQGDEFLGRVTIGLFGKTVPKTAENFRALATGEKGFGYEGSIFHRVIPNFM 84
>SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp3 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 173
Score = 61.7 bits (143), Expect = 1e-10
Identities = 31/64 (48%), Positives = 43/64 (67%), Gaps = 6/64 (9%)
Frame = +2
Query: 551 PQVYFDISVNKQEIGRIIMMLRADIVPKTAENFRSLCT------HEKGFGYQGSSFHRII 712
P V+ DI+++ + +GRI + L + IVPKTAENFR CT ++K GY+ S+FHRII
Sbjct: 5 PVVFMDIAIDGRLLGRIKIRLFSSIVPKTAENFRQFCTGETLGVNQKPIGYKNSTFHRII 64
Query: 713 PEFM 724
FM
Sbjct: 65 QGFM 68
>SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-trans
isomerase Wis2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 44.8 bits (101), Expect = 1e-05
Identities = 26/59 (44%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Frame = +2
Query: 560 YFDISVNKQEIGRIIMMLRADIVPKTAENFRSLCT-HEKG---FGYQGSSFHRIIPEFM 724
YF IS++ + I L ++VPKT +NF SLC EK Y+GS FHR+I FM
Sbjct: 6 YFKISIDGKIQPTIYFELFDNVVPKTVKNFASLCNGFEKDGRCLTYKGSRFHRVIKNFM 64
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 43.2 bits (97), Expect = 4e-05
Identities = 25/84 (29%), Positives = 36/84 (42%)
Frame = +2
Query: 137 NSKRTIYVGGLAEEVDEKVLNAAFIPFGDLVDVQIPLDYETEKHRGXXXXXXXXXXXXXX 316
N TIY+G L E+V + +L + G +V++ IP D H G
Sbjct: 8 NQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEY 67
Query: 317 XXXXXXXSELFGRTIRVNIAAPQR 388
+LFG+ IRVN A+ R
Sbjct: 68 ACQILNQVKLFGKPIRVNRASQDR 91
>SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 39.5 bits (88), Expect = 5e-04
Identities = 18/45 (40%), Positives = 31/45 (68%)
Frame = +2
Query: 590 IGRIIMMLRADIVPKTAENFRSLCTHEKGFGYQGSSFHRIIPEFM 724
+G+I++ L + PKT +NF +L ++G+ Y G FHR+IP+F+
Sbjct: 10 LGKILIELYTEHAPKTCQNFYTLA--KEGY-YDGVIFHRVIPDFV 51
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 38.7 bits (86), Expect = 8e-04
Identities = 15/32 (46%), Positives = 23/32 (71%)
Frame = +2
Query: 149 TIYVGGLAEEVDEKVLNAAFIPFGDLVDVQIP 244
T++VGGLA + EK L F PFG +++++IP
Sbjct: 298 TVFVGGLASNLSEKDLQVCFQPFGRILNIKIP 329
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 38.3 bits (85), Expect = 0.001
Identities = 16/33 (48%), Positives = 23/33 (69%)
Frame = +2
Query: 143 KRTIYVGGLAEEVDEKVLNAAFIPFGDLVDVQI 241
K T++VG LA V E +L AFIPFG+++ V +
Sbjct: 5 KATVHVGNLAPSVTESLLYNAFIPFGEIISVAL 37
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 35.9 bits (79), Expect = 0.006
Identities = 21/87 (24%), Positives = 36/87 (41%)
Frame = +2
Query: 152 IYVGGLAEEVDEKVLNAAFIPFGDLVDVQIPLDYETEKHRGXXXXXXXXXXXXXXXXXXX 331
IY+G L +++E + F FG+ VD+ + D ET K +G
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAVDNM 92
Query: 332 XXSELFGRTIRVNIAAPQRIKEGSTRP 412
+L R +RV+ A ++ + P
Sbjct: 93 TNVKLLDRLVRVDHVASYKVPQKEKEP 119
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 35.5 bits (78), Expect = 0.008
Identities = 19/89 (21%), Positives = 40/89 (44%)
Frame = +2
Query: 119 KMSSKPNSKRTIYVGGLAEEVDEKVLNAAFIPFGDLVDVQIPLDYETEKHRGXXXXXXXX 298
K S N T++VG L+ VD++ L F +G +V ++ +D ++ + +G
Sbjct: 254 KPSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFET 313
Query: 299 XXXXXXXXXXXXXSELFGRTIRVNIAAPQ 385
E+ GR + ++++ P+
Sbjct: 314 PEAAKAAVAANGTKEIDGRMVNLDLSNPR 342
Score = 30.3 bits (65), Expect = 0.29
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = +2
Query: 149 TIYVGGLAEEVDEKVLNAAFIPFGDLVDVQIPLDYETEKHRG 274
T++VG L+ E L+ AF GD+ +++P D ++ + +G
Sbjct: 367 TVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKG 408
>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 33.9 bits (74), Expect = 0.024
Identities = 18/44 (40%), Positives = 25/44 (56%)
Frame = +2
Query: 593 GRIIMMLRADIVPKTAENFRSLCTHEKGFGYQGSSFHRIIPEFM 724
G I + L VPK NF LC +G+ Y G+ HR++PEF+
Sbjct: 22 GDIQIELWCKEVPKACRNFIQLCL--EGY-YDGTIVHRVVPEFL 62
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 33.5 bits (73), Expect = 0.032
Identities = 15/32 (46%), Positives = 23/32 (71%)
Frame = +2
Query: 149 TIYVGGLAEEVDEKVLNAAFIPFGDLVDVQIP 244
T++VGGL++ V E+ L F FG++V V+IP
Sbjct: 304 TVFVGGLSKFVSEEELKYLFQNFGEIVYVKIP 335
>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
peptidyl-prolyl cis-trans isomerase
Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 610
Score = 30.7 bits (66), Expect = 0.22
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +2
Query: 593 GRIIMMLRADIVPKTAENFRSLCTHEKGFGYQGSSFHRIIPEFM 724
G I + L + PK +NF TH + Y + FHRII FM
Sbjct: 464 GDISIKLYPEEAPKAVQNFT---THAENGYYDNTIFHRIIKNFM 504
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 29.5 bits (63), Expect = 0.51
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 140 SKRTIYVGGLAEEVDEKVLNAAFIPFGDLVDVQIPL 247
S RT+YV G + + + L F PFG L+ IP+
Sbjct: 5 SLRTLYVTGFRDGMRARELAYEFEPFGPLIRCDIPI 40
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 29.1 bits (62), Expect = 0.68
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +2
Query: 146 RTIYVGGLAEEVDEKVLNAAFIPFGDLVDVQIPLDYETEKHRG 274
+ +++ L E L + F PFG L V +P+D +T +G
Sbjct: 323 KRLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKG 365
>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 639
Score = 28.7 bits (61), Expect = 0.90
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +1
Query: 529 ETDRETQSSSVFRHKCKQTRNRPY-NYDASSRHSPKNSGELS 651
ETDRET S RH + R + +D S R S + +G+ S
Sbjct: 17 ETDRETNHSRRHRHHHSRHRESKHGRHDRSERPSSREAGDRS 58
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 28.7 bits (61), Expect = 0.90
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +2
Query: 143 KRTIYVGGLAEEVDEKVLNAAFIPFGDLVDVQI 241
++ IYVGGL+ ++ L + F FG + +++I
Sbjct: 4 EKRIYVGGLSSSIESSDLESRFSRFGSVSNLEI 36
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 28.3 bits (60), Expect = 1.2
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +2
Query: 152 IYVGGLAEEVDEKVLNAAFIPFGDLVDVQIPLDYETEKHRG 274
+++GGL E + L F FG+++D + D T + RG
Sbjct: 165 MFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRG 205
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 27.9 bits (59), Expect = 1.6
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +2
Query: 146 RTIYVGGLAEEVDEKVLNAAFIPFGDLVDVQIPLDY 253
RT+++GG+ V E VL + F FG + + + +Y
Sbjct: 406 RTLFLGGITRSVREPVLRSMFERFGSVQSLILNHNY 441
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 27.1 bits (57), Expect = 2.7
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -3
Query: 721 EFWNDSMKATALVTETFLVCTQRSKVLRCFWDYVGSKH-HNYTAYF 587
+ WN ++ L+T + L+ TQ + + F + G + HN YF
Sbjct: 305 QLWNKTISNLQLITLSSLLSTQSDRWISLFLELQGLRALHNLLTYF 350
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 26.6 bits (56), Expect = 3.6
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +2
Query: 119 KMSSKPNSKRTI-YVGGLAEEVDEKVLNAAFIPFGDLVDVQIPLDYETEKHRG 274
+ K N ++ I +VG L ++ + L F G + V+IP D + + +G
Sbjct: 82 RQKGKNNDRKVILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKG 134
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 25.8 bits (54), Expect = 6.3
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +2
Query: 152 IYVGGLAEEVDEKVLNAAFIPFGDLVDVQIP-LDYETEK 265
+YV DE + F +G++VDV+ P L Y T +
Sbjct: 668 LYVTNFPPTYDELDITKLFSAYGNVVDVRFPSLRYNTNR 706
Score = 25.8 bits (54), Expect = 6.3
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +2
Query: 146 RTIYVGGLAEEVDEKVLNAAFIPFGDLVDVQIPLDYETEKHRG 274
R +YV + +V+EK + F +G + V+IP + K G
Sbjct: 757 RELYVTNIDFKVNEKDVETFFRDYGQVESVRIPKRFNQHKGFG 799
>SPBC23G7.08c |rga7||GTPase activating protein
Rga7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 25.4 bits (53), Expect = 8.4
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = -3
Query: 649 KVLRCFWDYVGSKHHNYTAYFLFVYTYVEIHLRIA 545
K+ + + + SKHH+ ++ V T +EIH ++A
Sbjct: 82 KLAKSYLETFQSKHHSPQSFSASVITSMEIHEQLA 116
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,758,167
Number of Sequences: 5004
Number of extensions: 51581
Number of successful extensions: 162
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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