Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11k18
(729 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical... 185 2e-47
U30943-1|AAC47116.1| 192|Caenorhabditis elegans cyclophilin-1 p... 80 1e-15
AL033512-4|CAA22075.1| 192|Caenorhabditis elegans Hypothetical ... 80 1e-15
AL032663-1|CAA21760.1| 171|Caenorhabditis elegans Hypothetical ... 79 2e-15
U27559-1|AAC47125.1| 171|Caenorhabditis elegans cyclophilin pro... 78 6e-15
Z92822-6|CAB07303.1| 172|Caenorhabditis elegans Hypothetical pr... 76 2e-14
U34354-1|AAC47127.1| 171|Caenorhabditis elegans cyclophilin iso... 72 4e-13
U31077-1|AAC47129.1| 173|Caenorhabditis elegans cyclophilin iso... 70 1e-12
AL032663-4|CAA21762.1| 173|Caenorhabditis elegans Hypothetical ... 70 1e-12
Z92784-1|CAB07192.1| 204|Caenorhabditis elegans Hypothetical pr... 64 1e-10
U31948-1|AAC47126.1| 204|Caenorhabditis elegans cyclophilin iso... 64 1e-10
U40938-4|AAK68283.1| 447|Caenorhabditis elegans Cyclophilin fam... 60 1e-09
U40938-3|AAA81696.1| 466|Caenorhabditis elegans Cyclophilin fam... 60 1e-09
U31078-1|AAC47130.1| 466|Caenorhabditis elegans cyclophilin iso... 60 1e-09
U27354-1|AAC47124.1| 201|Caenorhabditis elegans cyclophilin pro... 60 2e-09
U00051-7|AAA91355.1| 201|Caenorhabditis elegans Cyclophylin pro... 60 2e-09
Z66499-2|CAA91297.1| 183|Caenorhabditis elegans Hypothetical pr... 58 8e-09
U34955-1|AAC47115.1| 183|Caenorhabditis elegans cyclophilin iso... 58 8e-09
U64844-6|ABC71797.1| 174|Caenorhabditis elegans Hypothetical pr... 57 1e-08
Z48245-2|CAA88291.1| 309|Caenorhabditis elegans Hypothetical pr... 54 1e-07
Z37139-10|CAA85495.1| 309|Caenorhabditis elegans Hypothetical p... 54 1e-07
U95074-2|AAB94648.1| 309|Caenorhabditis elegans cyclophilin iso... 54 1e-07
U36581-1|AAC47131.1| 309|Caenorhabditis elegans cyclophilin iso... 54 1e-07
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 46 2e-05
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 46 2e-05
AC006720-2|AAF60445.3| 262|Caenorhabditis elegans Hypothetical ... 43 3e-04
U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical pr... 42 5e-04
U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical pr... 42 5e-04
U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 42 5e-04
U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical pr... 42 5e-04
AL110500-6|CAB60429.1| 629|Caenorhabditis elegans Hypothetical ... 42 6e-04
AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical ... 41 8e-04
AL032626-17|CAA21536.1| 282|Caenorhabditis elegans Hypothetical... 39 0.003
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 37 0.017
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 37 0.017
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 37 0.017
AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous t... 36 0.022
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 36 0.022
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 36 0.039
U58755-8|AAB00697.1| 169|Caenorhabditis elegans Cyclophylin pro... 36 0.039
AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor pr... 36 0.039
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 35 0.052
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 35 0.052
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 35 0.052
U34954-1|AAC47114.1| 147|Caenorhabditis elegans cyclophilin iso... 35 0.068
U23453-6|AAC46758.1| 147|Caenorhabditis elegans Cyclophylin pro... 35 0.068
U23453-5|AAK68671.1| 161|Caenorhabditis elegans Cyclophylin pro... 35 0.068
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 34 0.12
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 34 0.12
Z46935-9|CAA87053.1| 523|Caenorhabditis elegans Hypothetical pr... 33 0.28
Z36949-3|CAA85417.1| 523|Caenorhabditis elegans Hypothetical pr... 33 0.28
U36187-1|AAC06337.1| 523|Caenorhabditis elegans cyclophilin iso... 33 0.28
AF421146-1|AAL27008.1| 523|Caenorhabditis elegans cyclophilin M... 33 0.28
U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical pr... 32 0.48
Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical pr... 29 3.4
AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural RNA-bi... 29 3.4
AF068720-6|AAC17784.1| 541|Caenorhabditis elegans Hypothetical ... 29 4.5
Z81571-11|CAC35914.1| 1579|Caenorhabditis elegans Hypothetical p... 28 7.9
Z70287-8|CAA94301.2| 1717|Caenorhabditis elegans Hypothetical pr... 28 7.9
AL132848-7|CAC35915.1| 1579|Caenorhabditis elegans Hypothetical ... 28 7.9
>AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical
protein Y116A8C.34 protein.
Length = 331
Score = 185 bits (451), Expect = 2e-47
Identities = 92/196 (46%), Positives = 116/196 (59%)
Frame = +2
Query: 137 NSKRTIYVGGLAEEVDEKVLNAAFIPFGDLVDVQIPLDYETEKHRGXXXXXXXXXXXXXX 316
N KRT+YVGG E+V EKVL AAFIPFGD+V + IP+DYE+ KHRG
Sbjct: 8 NRKRTLYVGGFTEDVTEKVLMAAFIPFGDVVAISIPMDYESGKHRGFGFVEFDMAEDAAM 67
Query: 317 XXXXXXXSELFGRTIRVNIAAPQRIKEGSTRPVWSDDSWLQKHAGETLQLNXXXXXXXXX 496
SELFG+TIRVN A P + E S +PVW+DD WL+K+
Sbjct: 68 AIDNMNESELFGKTIRVNFARPPKATERSQKPVWADDEWLKKY-------GRGGEAAAEE 120
Query: 497 XXXXXXSVTPSKPIEKRNPQVYFDISVNKQEIGRIIMMLRADIVPKTAENFRSLCTHEKG 676
+ T S + P+VY + + + IGRI++ LR D+ PKTAENFR LCT E+G
Sbjct: 121 DGDAEKAATSSSSASTKLPRVYLGVKIGIRYIGRIVIELRTDVTPKTAENFRCLCTGERG 180
Query: 677 FGYQGSSFHRIIPEFM 724
FGY+GS FHRIIP+FM
Sbjct: 181 FGYEGSIFHRIIPKFM 196
>U30943-1|AAC47116.1| 192|Caenorhabditis elegans cyclophilin-1
protein.
Length = 192
Score = 80.2 bits (189), Expect = 1e-15
Identities = 37/67 (55%), Positives = 49/67 (73%), Gaps = 7/67 (10%)
Frame = +2
Query: 545 RNPQVYFDISVNKQEIGRIIMMLRADIVPKTAENFRSLCTHEKGFG-------YQGSSFH 703
+ P+V+FD+S+ ++ GR+ M L D+VPKTAENFR+LCT EKG G ++GS FH
Sbjct: 20 QRPKVFFDVSIGEEPAGRVTMELFNDVVPKTAENFRALCTGEKGVGEQGVALHFKGSKFH 79
Query: 704 RIIPEFM 724
RIIPEFM
Sbjct: 80 RIIPEFM 86
>AL033512-4|CAA22075.1| 192|Caenorhabditis elegans Hypothetical
protein Y49A3A.5 protein.
Length = 192
Score = 80.2 bits (189), Expect = 1e-15
Identities = 37/67 (55%), Positives = 49/67 (73%), Gaps = 7/67 (10%)
Frame = +2
Query: 545 RNPQVYFDISVNKQEIGRIIMMLRADIVPKTAENFRSLCTHEKGFG-------YQGSSFH 703
+ P+V+FD+S+ ++ GR+ M L D+VPKTAENFR+LCT EKG G ++GS FH
Sbjct: 20 QRPKVFFDVSIGEEPAGRVTMELFNDVVPKTAENFRALCTGEKGVGEQGVALHFKGSKFH 79
Query: 704 RIIPEFM 724
RIIPEFM
Sbjct: 80 RIIPEFM 86
>AL032663-1|CAA21760.1| 171|Caenorhabditis elegans Hypothetical
protein Y75B12B.2 protein.
Length = 171
Score = 79.4 bits (187), Expect = 2e-15
Identities = 39/65 (60%), Positives = 48/65 (73%), Gaps = 7/65 (10%)
Frame = +2
Query: 551 PQVYFDISVNKQEIGRIIMMLRADIVPKTAENFRSLCTHEKGFG-------YQGSSFHRI 709
P+V+FDI++ + GRI+M L DIVPKTAENFR+LCT EKG G ++GS FHRI
Sbjct: 4 PRVFFDITIAGKPTGRIVMELYNDIVPKTAENFRALCTGEKGVGKSGKPLHFKGSKFHRI 63
Query: 710 IPEFM 724
IPEFM
Sbjct: 64 IPEFM 68
>U27559-1|AAC47125.1| 171|Caenorhabditis elegans cyclophilin
protein.
Length = 171
Score = 78.2 bits (184), Expect = 6e-15
Identities = 39/65 (60%), Positives = 47/65 (72%), Gaps = 7/65 (10%)
Frame = +2
Query: 551 PQVYFDISVNKQEIGRIIMMLRADIVPKTAENFRSLCTHEKGFG-------YQGSSFHRI 709
P+V+FDI+ + GRI+M L DIVPKTAENFR+LCT EKG G ++GS FHRI
Sbjct: 4 PRVFFDITTAGKPTGRIVMELYNDIVPKTAENFRALCTGEKGVGKSGKPLHFKGSKFHRI 63
Query: 710 IPEFM 724
IPEFM
Sbjct: 64 IPEFM 68
>Z92822-6|CAB07303.1| 172|Caenorhabditis elegans Hypothetical
protein ZK520.5 protein.
Length = 172
Score = 76.2 bits (179), Expect = 2e-14
Identities = 38/64 (59%), Positives = 48/64 (75%), Gaps = 7/64 (10%)
Frame = +2
Query: 554 QVYFDISVNKQEIGRIIMMLRADIVPKTAENFRSLCTHEKGFG-------YQGSSFHRII 712
+V+FDI++ ++ GRI+M L DIVPKTAENFR+LCT EKG G ++GS FHRII
Sbjct: 5 KVFFDITIGGKKGGRIVMELYNDIVPKTAENFRALCTGEKGKGKSGKKLHFKGSKFHRII 64
Query: 713 PEFM 724
PEFM
Sbjct: 65 PEFM 68
>U34354-1|AAC47127.1| 171|Caenorhabditis elegans cyclophilin
isoform 2 (cyp-2) protein.
Length = 171
Score = 72.1 bits (169), Expect = 4e-13
Identities = 36/64 (56%), Positives = 46/64 (71%), Gaps = 7/64 (10%)
Frame = +2
Query: 554 QVYFDISVNKQEIGRIIMMLRADIVPKTAENFRSLCTHEKGFG-------YQGSSFHRII 712
+V+ DI++ ++ GRI+M L DI PKTAENFR+LCT EKG G ++GS FHRII
Sbjct: 5 KVFIDITIGGKKGGRIVMELYNDIAPKTAENFRALCTGEKGKGKSGKKLHFKGSKFHRII 64
Query: 713 PEFM 724
PEFM
Sbjct: 65 PEFM 68
>U31077-1|AAC47129.1| 173|Caenorhabditis elegans cyclophilin
isoform 3 protein.
Length = 173
Score = 70.1 bits (164), Expect = 1e-12
Identities = 34/64 (53%), Positives = 44/64 (68%), Gaps = 7/64 (10%)
Frame = +2
Query: 554 QVYFDISVNKQEIGRIIMMLRADIVPKTAENFRSLCTHEKGFG-------YQGSSFHRII 712
+V+FDI++ + GRI+M L D+VPKTA NFR+LCT E G G ++GS FHRII
Sbjct: 5 KVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRII 64
Query: 713 PEFM 724
P FM
Sbjct: 65 PNFM 68
>AL032663-4|CAA21762.1| 173|Caenorhabditis elegans Hypothetical
protein Y75B12B.5 protein.
Length = 173
Score = 70.1 bits (164), Expect = 1e-12
Identities = 34/64 (53%), Positives = 44/64 (68%), Gaps = 7/64 (10%)
Frame = +2
Query: 554 QVYFDISVNKQEIGRIIMMLRADIVPKTAENFRSLCTHEKGFG-------YQGSSFHRII 712
+V+FDI++ + GRI+M L D+VPKTA NFR+LCT E G G ++GS FHRII
Sbjct: 5 KVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRII 64
Query: 713 PEFM 724
P FM
Sbjct: 65 PNFM 68
>Z92784-1|CAB07192.1| 204|Caenorhabditis elegans Hypothetical
protein F31C3.1 protein.
Length = 204
Score = 63.7 bits (148), Expect = 1e-10
Identities = 30/61 (49%), Positives = 38/61 (62%)
Frame = +2
Query: 542 KRNPQVYFDISVNKQEIGRIIMMLRADIVPKTAENFRSLCTHEKGFGYQGSSFHRIIPEF 721
K +VYFD+ + + IGRI++ L VPKTA NF L KG GY GS FHR+I +F
Sbjct: 26 KVTDKVYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPKGEGYPGSKFHRVIADF 85
Query: 722 M 724
M
Sbjct: 86 M 86
>U31948-1|AAC47126.1| 204|Caenorhabditis elegans cyclophilin
isoform 5 protein.
Length = 204
Score = 63.7 bits (148), Expect = 1e-10
Identities = 30/61 (49%), Positives = 38/61 (62%)
Frame = +2
Query: 542 KRNPQVYFDISVNKQEIGRIIMMLRADIVPKTAENFRSLCTHEKGFGYQGSSFHRIIPEF 721
K +VYFD+ + + IGRI++ L VPKTA NF L KG GY GS FHR+I +F
Sbjct: 26 KVTDKVYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPKGEGYPGSKFHRVIADF 85
Query: 722 M 724
M
Sbjct: 86 M 86
>U40938-4|AAK68283.1| 447|Caenorhabditis elegans Cyclophilin family
protein 8, isoformb protein.
Length = 447
Score = 60.5 bits (140), Expect = 1e-09
Identities = 31/70 (44%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Frame = +2
Query: 533 PIEKRNPQVYFDISVNKQEIGRIIMMLRADIVPKTAENFRSLCTHEKG------FGYQGS 694
P + N + +FDIS+N + GRI+ L P+T ENFR+ CT E G YQGS
Sbjct: 3 PEVRGNKRAFFDISINGEPAGRIVFSLWNHCCPRTVENFRAFCTGELGKMNGHYASYQGS 62
Query: 695 SFHRIIPEFM 724
FHR+I FM
Sbjct: 63 VFHRVIKGFM 72
>U40938-3|AAA81696.1| 466|Caenorhabditis elegans Cyclophilin family
protein 8, isoforma protein.
Length = 466
Score = 60.5 bits (140), Expect = 1e-09
Identities = 31/70 (44%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Frame = +2
Query: 533 PIEKRNPQVYFDISVNKQEIGRIIMMLRADIVPKTAENFRSLCTHEKG------FGYQGS 694
P + N + +FDIS+N + GRI+ L P+T ENFR+ CT E G YQGS
Sbjct: 3 PEVRGNKRAFFDISINGEPAGRIVFSLWNHCCPRTVENFRAFCTGELGKMNGHYASYQGS 62
Query: 695 SFHRIIPEFM 724
FHR+I FM
Sbjct: 63 VFHRVIKGFM 72
>U31078-1|AAC47130.1| 466|Caenorhabditis elegans cyclophilin
isoform 8 protein.
Length = 466
Score = 60.5 bits (140), Expect = 1e-09
Identities = 31/70 (44%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Frame = +2
Query: 533 PIEKRNPQVYFDISVNKQEIGRIIMMLRADIVPKTAENFRSLCTHEKG------FGYQGS 694
P + N + +FDIS+N + GRI+ L P+T ENFR+ CT E G YQGS
Sbjct: 3 PEVRGNKRAFFDISINGEPAGRIVFSLWNHCCPRTVENFRAFCTGELGKMNGHYASYQGS 62
Query: 695 SFHRIIPEFM 724
FHR+I FM
Sbjct: 63 VFHRVIKGFM 72
>U27354-1|AAC47124.1| 201|Caenorhabditis elegans cyclophilin
protein.
Length = 201
Score = 59.7 bits (138), Expect = 2e-09
Identities = 24/57 (42%), Positives = 38/57 (66%)
Frame = +2
Query: 554 QVYFDISVNKQEIGRIIMMLRADIVPKTAENFRSLCTHEKGFGYQGSSFHRIIPEFM 724
+V+FD+ + + +G+I++ L ++VPKT +NF L +G GY GS FHR+I FM
Sbjct: 27 KVFFDMEIGGRPVGKIVIGLFGEVVPKTVKNFVELAQRAEGEGYVGSKFHRVIENFM 83
>U00051-7|AAA91355.1| 201|Caenorhabditis elegans Cyclophylin
protein 6 protein.
Length = 201
Score = 59.7 bits (138), Expect = 2e-09
Identities = 24/57 (42%), Positives = 38/57 (66%)
Frame = +2
Query: 554 QVYFDISVNKQEIGRIIMMLRADIVPKTAENFRSLCTHEKGFGYQGSSFHRIIPEFM 724
+V+FD+ + + +G+I++ L ++VPKT +NF L +G GY GS FHR+I FM
Sbjct: 27 KVFFDMEIGGRPVGKIVIGLFGEVVPKTVKNFVELAQRAEGEGYVGSKFHRVIENFM 83
>Z66499-2|CAA91297.1| 183|Caenorhabditis elegans Hypothetical
protein T01B7.4 protein.
Length = 183
Score = 57.6 bits (133), Expect = 8e-09
Identities = 28/64 (43%), Positives = 40/64 (62%), Gaps = 5/64 (7%)
Frame = +2
Query: 548 NPQVYFDISVNKQEIGRIIMMLRADIVPKTAENFRSLCTHE---KGF--GYQGSSFHRII 712
NP V+ +++ IG I++ L AD+ P+TAENFR CT E G GY+ +FHR+I
Sbjct: 16 NPIVFLEVTAGGAPIGTIVIELFADVTPRTAENFRQFCTGEYKKDGVPNGYKNCTFHRVI 75
Query: 713 PEFM 724
+FM
Sbjct: 76 KDFM 79
>U34955-1|AAC47115.1| 183|Caenorhabditis elegans cyclophilin
isoform 11 (CYP-11) protein.
Length = 183
Score = 57.6 bits (133), Expect = 8e-09
Identities = 28/64 (43%), Positives = 40/64 (62%), Gaps = 5/64 (7%)
Frame = +2
Query: 548 NPQVYFDISVNKQEIGRIIMMLRADIVPKTAENFRSLCTHE---KGF--GYQGSSFHRII 712
NP V+ +++ IG I++ L AD+ P+TAENFR CT E G GY+ +FHR+I
Sbjct: 16 NPIVFLEVTAGGAPIGTIVIELFADVTPRTAENFRQFCTGEYKKDGVPNGYKNCTFHRVI 75
Query: 713 PEFM 724
+FM
Sbjct: 76 KDFM 79
>U64844-6|ABC71797.1| 174|Caenorhabditis elegans Hypothetical
protein T22F3.12 protein.
Length = 174
Score = 56.8 bits (131), Expect = 1e-08
Identities = 23/56 (41%), Positives = 35/56 (62%)
Frame = +2
Query: 554 QVYFDISVNKQEIGRIIMMLRADIVPKTAENFRSLCTHEKGFGYQGSSFHRIIPEF 721
+V+ DI+ + +G+++ L + PKT ENF LCT GFGY+ F+R+IP F
Sbjct: 4 KVFMDITADGAPLGKLVFELNTEKCPKTCENFVKLCTGPPGFGYKNCVFYRVIPTF 59
>Z48245-2|CAA88291.1| 309|Caenorhabditis elegans Hypothetical
protein T27D1.1 protein.
Length = 309
Score = 53.6 bits (123), Expect = 1e-07
Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 8/65 (12%)
Frame = +2
Query: 554 QVYFDISVNKQEIGRIIMMLRADIVPKTAENFRSLCTHEKG--------FGYQGSSFHRI 709
+V+ DISV++ IGRI + L + PKT ENFR+LCT E G Y+ + FHRI
Sbjct: 6 RVFLDISVDENLIGRIEIRLFVEDAPKTCENFRALCTGEVGMTPNNKARLHYKQNEFHRI 65
Query: 710 IPEFM 724
+ +FM
Sbjct: 66 VKKFM 70
>Z37139-10|CAA85495.1| 309|Caenorhabditis elegans Hypothetical
protein T27D1.1 protein.
Length = 309
Score = 53.6 bits (123), Expect = 1e-07
Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 8/65 (12%)
Frame = +2
Query: 554 QVYFDISVNKQEIGRIIMMLRADIVPKTAENFRSLCTHEKG--------FGYQGSSFHRI 709
+V+ DISV++ IGRI + L + PKT ENFR+LCT E G Y+ + FHRI
Sbjct: 6 RVFLDISVDENLIGRIEIRLFVEDAPKTCENFRALCTGEVGMTPNNKARLHYKQNEFHRI 65
Query: 710 IPEFM 724
+ +FM
Sbjct: 66 VKKFM 70
>U95074-2|AAB94648.1| 309|Caenorhabditis elegans cyclophilin
isoform 9 protein.
Length = 309
Score = 53.6 bits (123), Expect = 1e-07
Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 8/65 (12%)
Frame = +2
Query: 554 QVYFDISVNKQEIGRIIMMLRADIVPKTAENFRSLCTHEKG--------FGYQGSSFHRI 709
+V+ DISV++ IGRI + L + PKT ENFR+LCT E G Y+ + FHRI
Sbjct: 6 RVFLDISVDENLIGRIEIRLFVEDAPKTCENFRALCTGEVGMTPNNKARLHYKQNEFHRI 65
Query: 710 IPEFM 724
+ +FM
Sbjct: 66 VKKFM 70
>U36581-1|AAC47131.1| 309|Caenorhabditis elegans cyclophilin
isoform 9 protein.
Length = 309
Score = 53.6 bits (123), Expect = 1e-07
Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 8/65 (12%)
Frame = +2
Query: 554 QVYFDISVNKQEIGRIIMMLRADIVPKTAENFRSLCTHEKG--------FGYQGSSFHRI 709
+V+ DISV++ IGRI + L + PKT ENFR+LCT E G Y+ + FHRI
Sbjct: 6 RVFLDISVDENLIGRIEIRLFVEDAPKTCENFRALCTGEVGMTPNNKARLHYKQNEFHRI 65
Query: 710 IPEFM 724
+ +FM
Sbjct: 66 VKKFM 70
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 46.4 bits (105), Expect = 2e-05
Identities = 26/81 (32%), Positives = 37/81 (45%)
Frame = +2
Query: 137 NSKRTIYVGGLAEEVDEKVLNAAFIPFGDLVDVQIPLDYETEKHRGXXXXXXXXXXXXXX 316
N TIYVGGL E+V E +L + G +V V +P D T H+G
Sbjct: 10 NQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADY 69
Query: 317 XXXXXXXSELFGRTIRVNIAA 379
+L+G+ I+VN A+
Sbjct: 70 AIKILNMIKLYGKPIKVNKAS 90
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +2
Query: 152 IYVGGLAEEVDEKVLNAAFIPFGDLVDV-QIPLDYETEKHRG 274
I+VG L EVDEK+L F FG ++ V +I D ++ +G
Sbjct: 102 IFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKG 143
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 46.4 bits (105), Expect = 2e-05
Identities = 26/81 (32%), Positives = 37/81 (45%)
Frame = +2
Query: 137 NSKRTIYVGGLAEEVDEKVLNAAFIPFGDLVDVQIPLDYETEKHRGXXXXXXXXXXXXXX 316
N TIYVGGL E+V E +L + G +V V +P D T H+G
Sbjct: 20 NQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADY 79
Query: 317 XXXXXXXSELFGRTIRVNIAA 379
+L+G+ I+VN A+
Sbjct: 80 AIKILNMIKLYGKPIKVNKAS 100
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +2
Query: 152 IYVGGLAEEVDEKVLNAAFIPFGDLVDV-QIPLDYETEKHRG 274
I+VG L EVDEK+L F FG ++ V +I D ++ +G
Sbjct: 112 IFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKG 153
>AC006720-2|AAF60445.3| 262|Caenorhabditis elegans Hypothetical
protein Y17G9B.4 protein.
Length = 262
Score = 42.7 bits (96), Expect = 3e-04
Identities = 22/49 (44%), Positives = 29/49 (59%)
Frame = +2
Query: 557 VYFDISVNKQEIGRIIMMLRADIVPKTAENFRSLCTHEKGFGYQGSSFH 703
V+ +S+ E G I++ L DIVP+TA+NF S CT EK G G H
Sbjct: 99 VFIHVSIGGIEEGCIVIQLFNDIVPRTAQNFESWCTGEKR-GKYGEPLH 146
>U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical
protein C18A3.5f protein.
Length = 295
Score = 41.9 bits (94), Expect = 5e-04
Identities = 25/75 (33%), Positives = 33/75 (44%)
Frame = +2
Query: 152 IYVGGLAEEVDEKVLNAAFIPFGDLVDVQIPLDYETEKHRGXXXXXXXXXXXXXXXXXXX 331
++VG L+ EVD + L AF PFGD+ D ++ D T K +G
Sbjct: 24 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 83
Query: 332 XXSELFGRTIRVNIA 376
L RTIR N A
Sbjct: 84 NGQWLGRRTIRTNWA 98
>U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical
protein C18A3.5e protein.
Length = 305
Score = 41.9 bits (94), Expect = 5e-04
Identities = 25/75 (33%), Positives = 33/75 (44%)
Frame = +2
Query: 152 IYVGGLAEEVDEKVLNAAFIPFGDLVDVQIPLDYETEKHRGXXXXXXXXXXXXXXXXXXX 331
++VG L+ EVD + L AF PFGD+ D ++ D T K +G
Sbjct: 34 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 93
Query: 332 XXSELFGRTIRVNIA 376
L RTIR N A
Sbjct: 94 NGQWLGRRTIRTNWA 108
>U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical
protein C18A3.5a protein.
Length = 408
Score = 41.9 bits (94), Expect = 5e-04
Identities = 25/75 (33%), Positives = 33/75 (44%)
Frame = +2
Query: 152 IYVGGLAEEVDEKVLNAAFIPFGDLVDVQIPLDYETEKHRGXXXXXXXXXXXXXXXXXXX 331
++VG L+ EVD + L AF PFGD+ D ++ D T K +G
Sbjct: 137 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 196
Query: 332 XXSELFGRTIRVNIA 376
L RTIR N A
Sbjct: 197 NGQWLGRRTIRTNWA 211
>U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical
protein C18A3.5b protein.
Length = 376
Score = 41.9 bits (94), Expect = 5e-04
Identities = 25/75 (33%), Positives = 33/75 (44%)
Frame = +2
Query: 152 IYVGGLAEEVDEKVLNAAFIPFGDLVDVQIPLDYETEKHRGXXXXXXXXXXXXXXXXXXX 331
++VG L+ EVD + L AF PFGD+ D ++ D T K +G
Sbjct: 105 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 164
Query: 332 XXSELFGRTIRVNIA 376
L RTIR N A
Sbjct: 165 NGQWLGRRTIRTNWA 179
>AL110500-6|CAB60429.1| 629|Caenorhabditis elegans Hypothetical
protein Y87G2A.6 protein.
Length = 629
Score = 41.5 bits (93), Expect = 6e-04
Identities = 21/44 (47%), Positives = 25/44 (56%)
Frame = +2
Query: 593 GRIIMMLRADIVPKTAENFRSLCTHEKGFGYQGSSFHRIIPEFM 724
G I + L D PKT ENF CTH + Y G +FHR+I FM
Sbjct: 483 GDITIRLFGDECPKTVENF---CTHSRRGYYNGLTFHRVIKSFM 523
>AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical
protein Y46G5A.13 protein.
Length = 434
Score = 41.1 bits (92), Expect = 8e-04
Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Frame = +2
Query: 128 SKPNSKRT--IYVGGLAEEVDEKVLNAAFIPFGDLVDVQIPLDYETEKHRGXXXXXXXXX 301
SKP + R ++VG L E+D L AF+ FG++ + +I D T K +G
Sbjct: 124 SKPETSRHFHVFVGDLCSEIDSTKLREAFVKFGEVSEAKIIRDNNTNKGKGYGFVSYPRR 183
Query: 302 XXXXXXXXXXXXSELFGRTIRVNIAAPQRIKEG 400
+ L RTIR N A + ++G
Sbjct: 184 EDAERAIDEMNGAWLGRRTIRTNWATRKPDEDG 216
>AL032626-17|CAA21536.1| 282|Caenorhabditis elegans Hypothetical
protein Y37D8A.21 protein.
Length = 282
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/40 (45%), Positives = 25/40 (62%)
Frame = +2
Query: 116 VKMSSKPNSKRTIYVGGLAEEVDEKVLNAAFIPFGDLVDV 235
+K + P +RTIYV +EEVDE++L FI G +V V
Sbjct: 3 IKPTPSPPEERTIYVANFSEEVDEELLEELFIQAGPVVKV 42
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 36.7 bits (81), Expect = 0.017
Identities = 15/50 (30%), Positives = 28/50 (56%)
Frame = +2
Query: 125 SSKPNSKRTIYVGGLAEEVDEKVLNAAFIPFGDLVDVQIPLDYETEKHRG 274
S +P + R I+VGGL + ++ + FG++ D+ + D T++ RG
Sbjct: 16 SLEPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRG 65
Score = 33.9 bits (74), Expect = 0.12
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +2
Query: 119 KMSSKPN-SKRTIYVGGLAEEVDEKVLNAAFIPFGDLVDVQIPLDYETEKHRG 274
K S+ N S + +YV G+ E+ E +L F +G + +I LD T+K RG
Sbjct: 104 KNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRG 156
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 36.7 bits (81), Expect = 0.017
Identities = 15/50 (30%), Positives = 28/50 (56%)
Frame = +2
Query: 125 SSKPNSKRTIYVGGLAEEVDEKVLNAAFIPFGDLVDVQIPLDYETEKHRG 274
S +P + R I+VGGL + ++ + FG++ D+ + D T++ RG
Sbjct: 16 SLEPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRG 65
Score = 33.9 bits (74), Expect = 0.12
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +2
Query: 119 KMSSKPN-SKRTIYVGGLAEEVDEKVLNAAFIPFGDLVDVQIPLDYETEKHRG 274
K S+ N S + +YV G+ E+ E +L F +G + +I LD T+K RG
Sbjct: 104 KNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRG 156
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 36.7 bits (81), Expect = 0.017
Identities = 15/50 (30%), Positives = 28/50 (56%)
Frame = +2
Query: 125 SSKPNSKRTIYVGGLAEEVDEKVLNAAFIPFGDLVDVQIPLDYETEKHRG 274
S +P + R I+VGGL + ++ + FG++ D+ + D T++ RG
Sbjct: 16 SLEPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRG 65
Score = 33.9 bits (74), Expect = 0.12
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +2
Query: 119 KMSSKPN-SKRTIYVGGLAEEVDEKVLNAAFIPFGDLVDVQIPLDYETEKHRG 274
K S+ N S + +YV G+ E+ E +L F +G + +I LD T+K RG
Sbjct: 104 KNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRG 156
>AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform a
protein.
Length = 305
Score = 36.3 bits (80), Expect = 0.022
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +2
Query: 128 SKPNSKRTIYVGGLAEEVDEKVLNAAFIPFGDLVDVQIPLDYETEKHR 271
+K + ++VGGL + E+ L + F FG + D++ P D +T+ R
Sbjct: 104 AKSRENKKVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARR 151
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 36.3 bits (80), Expect = 0.022
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +2
Query: 128 SKPNSKRTIYVGGLAEEVDEKVLNAAFIPFGDLVDVQIPLDYETEKHR 271
+K + ++VGGL + E+ L + F FG + D++ P D +T+ R
Sbjct: 104 AKSRENKKVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARR 151
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 35.5 bits (78), Expect = 0.039
Identities = 12/41 (29%), Positives = 28/41 (68%)
Frame = +2
Query: 152 IYVGGLAEEVDEKVLNAAFIPFGDLVDVQIPLDYETEKHRG 274
++VG L+++V ++L + F FG++ + ++ D +T+K +G
Sbjct: 137 VFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKG 177
>U58755-8|AAB00697.1| 169|Caenorhabditis elegans Cyclophylin
protein 12 protein.
Length = 169
Score = 35.5 bits (78), Expect = 0.039
Identities = 22/64 (34%), Positives = 32/64 (50%)
Frame = +2
Query: 533 PIEKRNPQVYFDISVNKQEIGRIIMMLRADIVPKTAENFRSLCTHEKGFGYQGSSFHRII 712
PI + P V D ++ G+I + L + P+T +NF L Y G+ FHRII
Sbjct: 4 PINDQAPYVILDTTM-----GKIALELYWNHAPRTCQNFSQLAKRNY---YNGTIFHRII 55
Query: 713 PEFM 724
+FM
Sbjct: 56 ADFM 59
>AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor
protein 12 protein.
Length = 248
Score = 35.5 bits (78), Expect = 0.039
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +2
Query: 152 IYVGGLAEEVDEKVLNAAFIPFGDLVDVQIPLDYETEKHRG 274
I+VGGL +K L+ F FGD+ + + D T+K RG
Sbjct: 37 IFVGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNTQKSRG 77
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 35.1 bits (77), Expect = 0.052
Identities = 22/87 (25%), Positives = 34/87 (39%)
Frame = +2
Query: 152 IYVGGLAEEVDEKVLNAAFIPFGDLVDVQIPLDYETEKHRGXXXXXXXXXXXXXXXXXXX 331
IYVG ++ E+ E +L AF PFG + + + D T H+
Sbjct: 104 IYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQESM 163
Query: 332 XXSELFGRTIRVNIAAPQRIKEGSTRP 412
L GR ++VN Q ++ P
Sbjct: 164 NGQMLGGRNLKVNSMMFQEMRLPQNMP 190
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 35.1 bits (77), Expect = 0.052
Identities = 22/87 (25%), Positives = 34/87 (39%)
Frame = +2
Query: 152 IYVGGLAEEVDEKVLNAAFIPFGDLVDVQIPLDYETEKHRGXXXXXXXXXXXXXXXXXXX 331
IYVG ++ E+ E +L AF PFG + + + D T H+
Sbjct: 104 IYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQESM 163
Query: 332 XXSELFGRTIRVNIAAPQRIKEGSTRP 412
L GR ++VN Q ++ P
Sbjct: 164 NGQMLGGRNLKVNSMMFQEMRLPQNMP 190
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 35.1 bits (77), Expect = 0.052
Identities = 22/87 (25%), Positives = 34/87 (39%)
Frame = +2
Query: 152 IYVGGLAEEVDEKVLNAAFIPFGDLVDVQIPLDYETEKHRGXXXXXXXXXXXXXXXXXXX 331
IYVG ++ E+ E +L AF PFG + + + D T H+
Sbjct: 104 IYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQESM 163
Query: 332 XXSELFGRTIRVNIAAPQRIKEGSTRP 412
L GR ++VN Q ++ P
Sbjct: 164 NGQMLGGRNLKVNSMMFQEMRLPQNMP 190
>U34954-1|AAC47114.1| 147|Caenorhabditis elegans cyclophilin
isoform 10 protein.
Length = 147
Score = 34.7 bits (76), Expect = 0.068
Identities = 19/44 (43%), Positives = 23/44 (52%)
Frame = +2
Query: 593 GRIIMMLRADIVPKTAENFRSLCTHEKGFGYQGSSFHRIIPEFM 724
G I + L D PK ENF +LC + Y G FHR I +FM
Sbjct: 10 GDIKIELYVDDAPKACENFLALCASDY---YNGCIFHRNIKDFM 50
>U23453-6|AAC46758.1| 147|Caenorhabditis elegans Cyclophylin
protein 10, isoform a protein.
Length = 147
Score = 34.7 bits (76), Expect = 0.068
Identities = 19/44 (43%), Positives = 23/44 (52%)
Frame = +2
Query: 593 GRIIMMLRADIVPKTAENFRSLCTHEKGFGYQGSSFHRIIPEFM 724
G I + L D PK ENF +LC + Y G FHR I +FM
Sbjct: 10 GDIKIELYVDDAPKACENFLALCASDY---YNGCIFHRNIKDFM 50
>U23453-5|AAK68671.1| 161|Caenorhabditis elegans Cyclophylin
protein 10, isoform b protein.
Length = 161
Score = 34.7 bits (76), Expect = 0.068
Identities = 19/44 (43%), Positives = 23/44 (52%)
Frame = +2
Query: 593 GRIIMMLRADIVPKTAENFRSLCTHEKGFGYQGSSFHRIIPEFM 724
G I + L D PK ENF +LC + Y G FHR I +FM
Sbjct: 10 GDIKIELYVDDAPKACENFLALCASDY---YNGCIFHRNIKDFM 50
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 33.9 bits (74), Expect = 0.12
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +2
Query: 119 KMSSKPN-SKRTIYVGGLAEEVDEKVLNAAFIPFGDLVDVQIPLDYETEKHRG 274
K S+ N S + +YV G+ E+ E +L F +G + +I LD T+K RG
Sbjct: 66 KNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRG 118
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 33.9 bits (74), Expect = 0.12
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +2
Query: 119 KMSSKPN-SKRTIYVGGLAEEVDEKVLNAAFIPFGDLVDVQIPLDYETEKHRG 274
K S+ N S + +YV G+ E+ E +L F +G + +I LD T+K RG
Sbjct: 66 KNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRG 118
>Z46935-9|CAA87053.1| 523|Caenorhabditis elegans Hypothetical
protein F59E10.2 protein.
Length = 523
Score = 32.7 bits (71), Expect = 0.28
Identities = 18/44 (40%), Positives = 26/44 (59%)
Frame = +2
Query: 593 GRIIMMLRADIVPKTAENFRSLCTHEKGFGYQGSSFHRIIPEFM 724
G + + L A VPK ENF + C++ G+ Y + FHR+I FM
Sbjct: 289 GPLNLELFAPKVPKACENFITHCSN--GY-YNNTKFHRLIKNFM 329
>Z36949-3|CAA85417.1| 523|Caenorhabditis elegans Hypothetical
protein F59E10.2 protein.
Length = 523
Score = 32.7 bits (71), Expect = 0.28
Identities = 18/44 (40%), Positives = 26/44 (59%)
Frame = +2
Query: 593 GRIIMMLRADIVPKTAENFRSLCTHEKGFGYQGSSFHRIIPEFM 724
G + + L A VPK ENF + C++ G+ Y + FHR+I FM
Sbjct: 289 GPLNLELFAPKVPKACENFITHCSN--GY-YNNTKFHRLIKNFM 329
>U36187-1|AAC06337.1| 523|Caenorhabditis elegans cyclophilin
isoform 4 protein.
Length = 523
Score = 32.7 bits (71), Expect = 0.28
Identities = 18/44 (40%), Positives = 26/44 (59%)
Frame = +2
Query: 593 GRIIMMLRADIVPKTAENFRSLCTHEKGFGYQGSSFHRIIPEFM 724
G + + L A VPK ENF + C++ G+ Y + FHR+I FM
Sbjct: 289 GPLNLELFAPKVPKACENFITHCSN--GY-YNNTKFHRLIKNFM 329
>AF421146-1|AAL27008.1| 523|Caenorhabditis elegans cyclophilin
MOG-6 protein.
Length = 523
Score = 32.7 bits (71), Expect = 0.28
Identities = 18/44 (40%), Positives = 26/44 (59%)
Frame = +2
Query: 593 GRIIMMLRADIVPKTAENFRSLCTHEKGFGYQGSSFHRIIPEFM 724
G + + L A VPK ENF + C++ G+ Y + FHR+I FM
Sbjct: 289 GPLNLELFAPKVPKACENFITHCSN--GY-YNNTKFHRLIKNFM 329
>U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical
protein C30B5.4 protein.
Length = 302
Score = 31.9 bits (69), Expect = 0.48
Identities = 13/41 (31%), Positives = 26/41 (63%)
Frame = +2
Query: 152 IYVGGLAEEVDEKVLNAAFIPFGDLVDVQIPLDYETEKHRG 274
IY+GGL+ + E + A F +G+++++ + D +T K +G
Sbjct: 40 IYIGGLSYALSEGDVIAVFSQYGEVMNINLIRDKDTGKSKG 80
>Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical
protein R10E9.1 protein.
Length = 320
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/43 (25%), Positives = 23/43 (53%)
Frame = +2
Query: 146 RTIYVGGLAEEVDEKVLNAAFIPFGDLVDVQIPLDYETEKHRG 274
+ +++GGL+ + + F +G + D + D T++HRG
Sbjct: 134 KKVFIGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRG 176
>AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural
RNA-binding protein MSI-1 protein.
Length = 320
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/43 (25%), Positives = 23/43 (53%)
Frame = +2
Query: 146 RTIYVGGLAEEVDEKVLNAAFIPFGDLVDVQIPLDYETEKHRG 274
+ +++GGL+ + + F +G + D + D T++HRG
Sbjct: 134 KKVFIGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRG 176
>AF068720-6|AAC17784.1| 541|Caenorhabditis elegans Hypothetical
protein K02H11.4 protein.
Length = 541
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/23 (60%), Positives = 14/23 (60%)
Frame = +2
Query: 200 AAFIPFGDLVDVQIPLDYETEKH 268
A FI F DL DV IP YET H
Sbjct: 301 AKFITFADLDDVLIPRGYETYFH 323
>Z81571-11|CAC35914.1| 1579|Caenorhabditis elegans Hypothetical
protein M01G12.12 protein.
Length = 1579
Score = 27.9 bits (59), Expect = 7.9
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = -2
Query: 482 LHHLCSVEEFPQH 444
LHHLC V FPQH
Sbjct: 903 LHHLCDVVVFPQH 915
>Z70287-8|CAA94301.2| 1717|Caenorhabditis elegans Hypothetical protein
R09E10.7 protein.
Length = 1717
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/38 (42%), Positives = 18/38 (47%)
Frame = +1
Query: 529 ETDRETQSSSVFRHKCKQTRNRPYNYDASSRHSPKNSG 642
E R S + R TR+RP N DA S S NSG
Sbjct: 1064 ELQRMIDSEMIPRPPALITRSRPSNEDARSSSSSDNSG 1101
>AL132848-7|CAC35915.1| 1579|Caenorhabditis elegans Hypothetical
protein M01G12.12 protein.
Length = 1579
Score = 27.9 bits (59), Expect = 7.9
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = -2
Query: 482 LHHLCSVEEFPQH 444
LHHLC V FPQH
Sbjct: 903 LHHLCDVVVFPQH 915
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,127,050
Number of Sequences: 27780
Number of extensions: 285557
Number of successful extensions: 780
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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