Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11k17
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|c...   107   2e-24
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    32   0.069
SPAC16A10.06c |nse2||Smc5-6 complex non-SMC subunit 2 |Schizosac...    31   0.12 
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc...    29   0.85 
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      27   2.6  
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch...    27   3.4  
SPAC589.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   3.4  
SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha sub...    27   3.4  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    26   4.5  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    26   6.0  
SPBC8E4.05c |||fumarate lyase superfamily|Schizosaccharomyces po...    26   6.0  
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    25   7.9  

>SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 240

 Score =  107 bits (257), Expect = 2e-24
 Identities = 62/198 (31%), Positives = 103/198 (52%), Gaps = 3/198 (1%)
 Frame = +2

Query: 113 MGCDGGTIPRRDELVRMKKKPEQKDKDAERSFK---WRNCALSQQILQEPIVACSLGRLY 283
           MG DGG++P R+ELV+   K    D D +RS K   +  CA++ + L  PIV+C LG+LY
Sbjct: 1   MGNDGGSLPTRNELVKEPGKVPPLDIDFKRSVKSSQFSQCAITDEPLYPPIVSCGLGKLY 60

Query: 284 SKSSVLEALLDKETRPESINHXXXXXXXXXXXXXXXPAYVPTDHTDGTFDNGSAPYICPI 463
           +K+S+L+ LLD+ + P+S +H                  V  D      D+G   ++CPI
Sbjct: 61  NKASILQMLLDRSSVPKSPSH-------IKSLKDVVQLQVELD------DSGKVLWLCPI 107

Query: 464 SGLEMTGKFRFVFLWSCGCVLAERALKEVRQNLCHMCQQPFTDNDIVVLNGTEEDIEKLK 643
           +   M+  ++F ++  CG V    ALK+  + +C  C Q + + D++ +N   E ++ L 
Sbjct: 108 TRHVMSDTYQFAYIVPCGHVFEYSALKQFGEKMCFQCNQVYEEKDVIPINPNAEQLKTLS 167

Query: 644 DKMAIRVSNRKNIKKNKA 697
            ++     + K    NKA
Sbjct: 168 KRLLDLALSEKTHSLNKA 185


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 32.3 bits (70), Expect = 0.069
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
 Frame = +2

Query: 512 CGCVLAERALKEVRQN----LCHMCQQPFTDNDI 601
           CG  L+E    + R+N    LCH C+QPF + D+
Sbjct: 898 CGDCLSEHIQYQKRRNIIPPLCHTCRQPFNEQDV 931


>SPAC16A10.06c |nse2||Smc5-6 complex non-SMC subunit 2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 250

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
 Frame = +2

Query: 92  KTHIFHKMGCDGGTIPRRDELVRMKKKPEQK-DKDAERSFKWRN-CALSQQILQEPIVAC 265
           K  I+H+   DG   P       +    EQ+ D+    S  + N C L+ Q +  PI++ 
Sbjct: 134 KKTIWHEQNTDGSDFPSMKTFFNVMNTEEQEADEVMVYSATFDNRCPLTLQPIVHPILST 193

Query: 266 SLGRLYSKSSVLEAL 310
           +    Y K ++L  L
Sbjct: 194 ACNHFYEKDAILSLL 208


>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 636

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +2

Query: 437 GSAPYICPISGLEMTGKFRFVFLWSCGCV 523
           GSAPYI P    E     R V +W+CG +
Sbjct: 522 GSAPYIAPEEYTESEFDPRAVDVWACGVI 550


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -3

Query: 218 YAT*NFFQHLYLSVLASFSFERAHRVEELYRHHNPFCEKYVFFHYFF 78
           +AT + F  L+   L S  F R   ++  Y HH+ F  +  F+ +FF
Sbjct: 37  FATLHAFVFLFSHTLVSSQFRR---LKLPYHHHHTFTIEAFFYWFFF 80


>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 269

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = -2

Query: 597 SLSVNGC*HIWHRFCRTSFSALSASTQ--PQLQRKTKRNFPVISKPLIG 457
           +LS   C HI+  FC  S    +A+TQ  P  +RK   N  +  + ++G
Sbjct: 215 NLSCTPCGHIFCNFCILSALGTTAATQKCPVCRRKVHPNKVICLEMMLG 263


>SPAC589.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 168

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 5/38 (13%)
 Frame = +2

Query: 593 NDIVVLNGTEEDIEKLKD-----KMAIRVSNRKNIKKN 691
           +DI  L GTEED+E ++D     ++     NRK  KK+
Sbjct: 75  HDIKELGGTEEDLELIEDVESDEELEFEEPNRKQPKKD 112


>SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha
           subunit Tfg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 490

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 590 DNDIVVLNGTEEDIEKLKDKM 652
           D +  ++ G EED +KLKDK+
Sbjct: 274 DEEAPIMEGNEEDNKKLKDKI 294


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 9/65 (13%)
 Frame = +2

Query: 503 LWSCGCVLAE----RALKEVRQNLCHMCQQ-----PFTDNDIVVLNGTEEDIEKLKDKMA 655
           +WS GC+L E    +AL +  ++  H+C       PF  N I   + T +   K   K+ 
Sbjct: 562 VWSIGCILVELFTGQALFQTHEDSEHLCMMEKILGPFDRNMISRSSRTSQRFFKSDGKVR 621

Query: 656 IRVSN 670
             +SN
Sbjct: 622 YPLSN 626


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1822

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -3

Query: 281 KVFQDCMPLLVLVVFAARAH-NYAT*NFFQHLYLSVL 174
           +VF+ C  +  L+VF+ RAH       FF+ +Y  +L
Sbjct: 478 QVFEVCCDIFYLMVFSLRAHFKQEIEVFFREVYFPML 514


>SPBC8E4.05c |||fumarate lyase superfamily|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 194 HLYLSVLASFSFERAHRVEELYRHHNPFCE 105
           +L  +V  +F F+ A  V  L RHH   CE
Sbjct: 155 NLQQAVPITFGFKMARFVATLRRHHQRLCE 184


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 7/13 (53%), Positives = 12/13 (92%)
 Frame = -1

Query: 655 CHLVFQFFNVFLC 617
           CH++++F+NV LC
Sbjct: 267 CHMIYKFWNVKLC 279


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,976,720
Number of Sequences: 5004
Number of extensions: 62840
Number of successful extensions: 212
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)