Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11k17
(700 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81029-4|CAB02700.1| 300|Caenorhabditis elegans Hypothetical pr... 140 7e-34
U42436-5|AAF99894.2| 796|Caenorhabditis elegans Not-like (yeast... 29 2.4
Z68000-3|CAA91971.1| 1225|Caenorhabditis elegans Hypothetical pr... 29 3.2
U29381-14|ABI54346.1| 1840|Caenorhabditis elegans Hypothetical p... 29 3.2
U29381-13|ABI54348.1| 1898|Caenorhabditis elegans Hypothetical p... 29 3.2
U29381-12|AAM98022.3| 1671|Caenorhabditis elegans Hypothetical p... 29 3.2
U29381-11|ABI54347.1| 1911|Caenorhabditis elegans Hypothetical p... 29 3.2
Z46812-2|CAA86844.1| 1027|Caenorhabditis elegans Hypothetical pr... 29 4.2
AL161712-12|CAC70144.1| 789|Caenorhabditis elegans Hypothetical... 28 5.6
AF125459-16|AAD12835.1| 578|Caenorhabditis elegans Hypothetical... 28 5.6
Z95559-8|CAB54437.1| 720|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z75710-5|CAB54207.1| 240|Caenorhabditis elegans Hypothetical pr... 27 9.8
AL021387-2|CAA16168.1| 463|Caenorhabditis elegans Hypothetical ... 27 9.8
AF273769-1|AAG15118.1| 463|Caenorhabditis elegans nuclear recep... 27 9.8
AF083222-1|AAD03680.1| 463|Caenorhabditis elegans nuclear recep... 27 9.8
>Z81029-4|CAB02700.1| 300|Caenorhabditis elegans Hypothetical
protein C01A2.5 protein.
Length = 300
Score = 140 bits (340), Expect = 7e-34
Identities = 71/198 (35%), Positives = 108/198 (54%), Gaps = 2/198 (1%)
Frame = +2
Query: 113 MGCDGGTIPRRDELVRMKKKPEQKDKDAERSFKWRNCALSQQILQEPIVACSLGRLYSKS 292
MG DGGTIP+R ELV+ +KK E+ DK + + KWRNC L+Q L+ P++AC G+LY+K
Sbjct: 1 MGADGGTIPKRCELVKERKKKEKLDKHVKNATKWRNCQLTQLPLKRPVIACRFGKLYNKE 60
Query: 293 SVLEALLDKE-TRPESINHXXXXXXXXXXXXXXXPAYVPTD-HTDGTFDNGSAPYICPIS 466
V+ ++L K ++ S +H + D D D +ICPI+
Sbjct: 61 DVINSILSKTISKSASASHIKGPKDFVELKLTLNKDFKRGDVKGDDYNDVNQTEFICPIT 120
Query: 467 GLEMTGKFRFVFLWSCGCVLAERALKEVRQNLCHMCQQPFTDNDIVVLNGTEEDIEKLKD 646
+ M G F+ W CGCV +E+A +EV+ + CH+C P+ +V+LN E +E K
Sbjct: 121 NVPMNGIQSFLVNWQCGCVYSEKAQQEVKSSNCHVCGGPYDATKMVILNPEPEQLELYKL 180
Query: 647 KMAIRVSNRKNIKKNKAE 700
K + + KK+KA+
Sbjct: 181 KWEAEKAEKAAAKKDKAK 198
>U42436-5|AAF99894.2| 796|Caenorhabditis elegans Not-like (yeast
ccr4/not complexcomponent) protein 4, isoform a protein.
Length = 796
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/53 (22%), Positives = 24/53 (45%)
Frame = +2
Query: 518 CVLAERALKEVRQNLCHMCQQPFTDNDIVVLNGTEEDIEKLKDKMAIRVSNRK 676
C ++ LC C+QP+ ++ + T +D+ K KD+ ++ K
Sbjct: 37 CRFCWHRIRTDENGLCPACRQPYPEDPVNFKPMTTDDVRKHKDEQRLKKQAEK 89
>Z68000-3|CAA91971.1| 1225|Caenorhabditis elegans Hypothetical protein
C05C9.3 protein.
Length = 1225
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -3
Query: 530 QQAHSHSSREK-QNEIFQSSPSH**GRCKEHSHYQMSHQYGL*EHMQ 393
QQ +H R+ Q E+FQS P H + H H Q ++Q +H Q
Sbjct: 1114 QQNQNHHVRQAVQEEVFQSFPRH---DVQRHIHGQTNYQQNQRQHSQ 1157
>U29381-14|ABI54346.1| 1840|Caenorhabditis elegans Hypothetical
protein F35D11.11a protein.
Length = 1840
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 608 LNGTEEDIEKLKDKMAIRVSNRKNIKKNK 694
L TE ++EKLKD++A+ + +K K
Sbjct: 1021 LETTEAELEKLKDELAVMLKQNSELKNGK 1049
>U29381-13|ABI54348.1| 1898|Caenorhabditis elegans Hypothetical
protein F35D11.11c protein.
Length = 1898
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 608 LNGTEEDIEKLKDKMAIRVSNRKNIKKNK 694
L TE ++EKLKD++A+ + +K K
Sbjct: 1021 LETTEAELEKLKDELAVMLKQNSELKNGK 1049
>U29381-12|AAM98022.3| 1671|Caenorhabditis elegans Hypothetical
protein F35D11.11d protein.
Length = 1671
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 608 LNGTEEDIEKLKDKMAIRVSNRKNIKKNK 694
L TE ++EKLKD++A+ + +K K
Sbjct: 781 LETTEAELEKLKDELAVMLKQNSELKNGK 809
>U29381-11|ABI54347.1| 1911|Caenorhabditis elegans Hypothetical
protein F35D11.11b protein.
Length = 1911
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 608 LNGTEEDIEKLKDKMAIRVSNRKNIKKNK 694
L TE ++EKLKD++A+ + +K K
Sbjct: 1021 LETTEAELEKLKDELAVMLKQNSELKNGK 1049
>Z46812-2|CAA86844.1| 1027|Caenorhabditis elegans Hypothetical
protein ZK675.2 protein.
Length = 1027
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/28 (46%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = -3
Query: 179 VLASFSFE-RAHRVEELYRHHNPFCEKY 99
+LAS++ E RA +E+Y + + FCEKY
Sbjct: 529 ILASYTLEVRAVSCDEMYINMSSFCEKY 556
>AL161712-12|CAC70144.1| 789|Caenorhabditis elegans Hypothetical
protein Y66D12A.15 protein.
Length = 789
Score = 28.3 bits (60), Expect = 5.6
Identities = 10/46 (21%), Positives = 27/46 (58%)
Frame = -2
Query: 168 FFIRTSSSRRGIVPPSQPIL*KICVFSLFLYPRQNQRCVIFALNFY 31
+++R+ +R+ ++ P +IC F + + R+N + ++F+ N +
Sbjct: 534 YYLRSQIARKLLLAVMNPNKFRICQFLIKFHERRNDKIIVFSDNVF 579
>AF125459-16|AAD12835.1| 578|Caenorhabditis elegans Hypothetical
protein Y25C1A.1 protein.
Length = 578
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -1
Query: 154 ELIASRNCTAIT-THFVKNMCFFTISLSKTKPTLCYF 47
E+I N ++ THF K F +S S+T P C F
Sbjct: 356 EIIECDNMNSVAITHFAKGAAFVPMSDSQTAPVWCKF 392
>Z95559-8|CAB54437.1| 720|Caenorhabditis elegans Hypothetical
protein Y41E3.16 protein.
Length = 720
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 121 TTHFVKNMCFFTISLSKTKPTLCYFCLEFLL 29
TT F+KN F+ + + PT+ +F EF L
Sbjct: 617 TTSFLKNKIIFSTRIVISSPTIYFFFSEFCL 647
>Z75710-5|CAB54207.1| 240|Caenorhabditis elegans Hypothetical
protein D1081.9 protein.
Length = 240
Score = 27.5 bits (58), Expect = 9.8
Identities = 9/35 (25%), Positives = 20/35 (57%)
Frame = +2
Query: 497 VFLWSCGCVLAERALKEVRQNLCHMCQQPFTDNDI 601
++L +CG V + K + C++C++P ++I
Sbjct: 18 LYLTACGHVFCQNCTKAAFNSQCYLCKKPLKVDEI 52
>AL021387-2|CAA16168.1| 463|Caenorhabditis elegans Hypothetical
protein H01A20.1 protein.
Length = 463
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2
Query: 246 CSICCESAQLRHLKLLSASLSFCSGFF 166
CS+CC+ A RH +++ C GFF
Sbjct: 53 CSVCCDEASGRHYGVVAC--FGCKGFF 77
>AF273769-1|AAG15118.1| 463|Caenorhabditis elegans nuclear receptor
NHR-3 protein.
Length = 463
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2
Query: 246 CSICCESAQLRHLKLLSASLSFCSGFF 166
CS+CC+ A RH +++ C GFF
Sbjct: 53 CSVCCDEASGRHYGVVAC--FGCKGFF 77
>AF083222-1|AAD03680.1| 463|Caenorhabditis elegans nuclear receptor
NHR-3 protein.
Length = 463
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2
Query: 246 CSICCESAQLRHLKLLSASLSFCSGFF 166
CS+CC+ A RH +++ C GFF
Sbjct: 53 CSVCCDEASGRHYGVVAC--FGCKGFF 77
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,567,946
Number of Sequences: 27780
Number of extensions: 361285
Number of successful extensions: 1410
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1409
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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