Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11k17
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        25   0.69 
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        25   0.69 
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        25   0.69 
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   2.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   4.9  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   6.4  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 25.0 bits (52), Expect = 0.69
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 533 RALKEVRQNLCHMCQQP 583
           R LKE   N+C +C++P
Sbjct: 209 RRLKETYSNMCALCEKP 225


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 25.0 bits (52), Expect = 0.69
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 533 RALKEVRQNLCHMCQQP 583
           R LKE   N+C +C++P
Sbjct: 209 RRLKETYSNMCALCEKP 225


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 25.0 bits (52), Expect = 0.69
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 533 RALKEVRQNLCHMCQQP 583
           R LKE   N+C +C++P
Sbjct: 209 RRLKETYSNMCALCEKP 225


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 8/33 (24%), Positives = 16/33 (48%)
 Frame = -2

Query: 99  CVFSLFLYPRQNQRCVIFALNFYYGT*SRILYY 1
           C+  L  YP  +Q C +   ++ Y     ++Y+
Sbjct: 161 CMMDLHYYPLDSQNCTVEIESYGYTVLDVVMYW 193


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -3

Query: 176 LASFSFERAHRVEELYRHHN 117
           L  F FER   + ELY  +N
Sbjct: 857 LKGFEFERLSHLRELYLQNN 876


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/20 (50%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = -3

Query: 104 KYVFF-HYFFIQDKTNVVLF 48
           KY+ F  +FFI+  TNV+ F
Sbjct: 8   KYINFDRFFFIEGMTNVLDF 27


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,389
Number of Sequences: 438
Number of extensions: 3952
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)