Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11k14
         (335 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0012 - 70296-70398,70494-70648,70737-70843,71138-71216,713...    28   2.2  
02_01_0548 + 4035265-4035431,4035517-4035651,4035859-4036081,403...    27   5.0  
04_04_0946 - 29579779-29580004,29580098-29580210                       23   5.2  
04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355     26   6.6  
02_02_0310 - 8842286-8843314                                           26   6.6  

>05_01_0012 -
           70296-70398,70494-70648,70737-70843,71138-71216,
           71343-71423,71556-72581
          Length = 516

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +1

Query: 4   TKAWRFLHLMKRDLWYLIITES*RQNYHHHHRRSQHFVDLVASIKRQ 144
           T+  R LH  KR +   +  E   +N+HHHH    H +  V   +RQ
Sbjct: 248 TRFRRGLHARKR-IMAALREEMAARNHHHHHHHHHHDLLSVLMQRRQ 293


>02_01_0548 +
           4035265-4035431,4035517-4035651,4035859-4036081,
           4036282-4036468,4036627-4036811,4037435-4037572,
           4037995-4038123
          Length = 387

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 9/40 (22%), Positives = 23/40 (57%)
 Frame = +1

Query: 22  LHLMKRDLWYLIITES*RQNYHHHHRRSQHFVDLVASIKR 141
           + +M+ D+ YL+  E  +  ++   R ++HF+  ++  +R
Sbjct: 174 VEVMENDVLYLVSLEGQKTGFYADQRENRHFISTLSKDQR 213


>04_04_0946 - 29579779-29580004,29580098-29580210
          Length = 112

 Score = 23.4 bits (48), Expect(2) = 5.2
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +1

Query: 34  KRDLWYLIITES*RQNYHHHHR 99
           KR   + +      +N+HHHHR
Sbjct: 64  KRAAAHAVSVRKEHRNHHHHHR 85



 Score = 21.8 bits (44), Expect(2) = 5.2
 Identities = 6/9 (66%), Positives = 6/9 (66%)
 Frame = +1

Query: 85  HHHHRRSQH 111
           HHHH R  H
Sbjct: 80  HHHHHRHHH 88


>04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355
          Length = 1109

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +1

Query: 73  RQNYHHHHRRSQ 108
           RQ +HHHH+R Q
Sbjct: 146 RQRHHHHHQRQQ 157


>02_02_0310 - 8842286-8843314
          Length = 342

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 73  RQNYHHHHRRSQHFVD 120
           R+++HHHHR   H  D
Sbjct: 184 RRSHHHHHRHHHHHHD 199


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,549,085
Number of Sequences: 37544
Number of extensions: 93774
Number of successful extensions: 307
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 294
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 471517020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)