Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11k13
         (145 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar...    23   4.2  
SPAC1687.12c |coq4||ubiquinone biosynthesis protein Coq4|Schizos...    23   4.2  
SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase |Schizosaccharo...    23   5.5  
SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr 1|...    23   7.3  
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc...    22   9.6  

>SPBC530.10c |anc1||adenine nucleotide carrier
           Anc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -1

Query: 142 FFSGRGPNLLRGPRAKGARGV 80
           FF G G N+LRG    G   +
Sbjct: 289 FFKGAGANILRGVAGAGVLSI 309


>SPAC1687.12c |coq4||ubiquinone biosynthesis protein
           Coq4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 272

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 76  HIPRAPLLRGDLVGGSAL 129
           H+P +PL R  LV GSA+
Sbjct: 50  HVPLSPLQRIFLVAGSAI 67


>SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 571

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 138 FRVEGRTSYEVPAQKGRAGYVRLNGLHGVVS 46
           FR  G T+ E+       GY R+NGL  +V+
Sbjct: 46  FRWVGNTN-ELNGAYAADGYARVNGLSAIVT 75


>SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 376

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 37  PRSAHNTMQTVESHIPRAPLLRGDL 111
           PRS  N + T +S IP   L  GD+
Sbjct: 293 PRSIQNLVWTNQSTIPMMTLHAGDV 317


>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 852

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 135 RVEGRTSYEVPAQKGR 88
           R E R +YE+P  KGR
Sbjct: 464 RQEFRKNYEIPILKGR 479


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.131    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 631,975
Number of Sequences: 5004
Number of extensions: 8242
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 2,362,478
effective HSP length: 28
effective length of database: 2,222,366
effective search space used: 42224954
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)