Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11k11
(703 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 43 4e-05
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 41 1e-04
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 38 0.001
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 37 0.003
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 37 0.003
SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomy... 37 0.003
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 36 0.004
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 36 0.006
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 35 0.013
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 34 0.017
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 33 0.040
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 33 0.040
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 33 0.040
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 33 0.052
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 32 0.091
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 31 0.12
SPCC1795.06 |map2||P-factor |Schizosaccharomyces pombe|chr 3|||M... 31 0.16
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 31 0.21
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 30 0.37
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 30 0.37
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 29 0.49
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce... 29 0.49
SPAC6F12.03c |fsv1||SNARE Fsv1|Schizosaccharomyces pombe|chr 1||... 29 0.85
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |... 29 0.85
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 28 1.1
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 28 1.5
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 28 1.5
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 27 2.0
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 27 2.0
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 27 2.6
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 27 2.6
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 27 2.6
SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p... 26 4.5
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 26 4.5
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 4.5
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 26 4.5
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 26 6.0
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb... 26 6.0
SPAC4H3.01 |||DNAJ domain protein Caj1/Djp1 type|Schizosaccharom... 26 6.0
SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c... 25 7.9
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce... 25 7.9
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces... 25 7.9
SPBC3F6.01c |||serine/threonine protein phosphatase |Schizosacch... 25 7.9
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 43.2 bits (97), Expect = 4e-05
Identities = 42/163 (25%), Positives = 77/163 (47%), Gaps = 5/163 (3%)
Frame = +1
Query: 112 RLFVSNIPENTNEDELRCAFSKFGKVNSLDLKCKSS-IEENKTFAFITLSASNYDIESYS 288
R++V + + +L FS+FG V++L++ KS+ + + FA++ N+ +
Sbjct: 6 RIYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTPVGTIQRFAYL-----NFRTDEDK 60
Query: 289 NSKMKLYSHFKCGI*KKSIKCFTSEEFKGSRLYVTRARESFLERLQRERNEAQRKET--- 459
K K Y ++ FKGS+L + AR +L +LQ+E+ A + T
Sbjct: 61 WQKCKSY--------------LSNATFKGSKLRIEEARPYYLVKLQQEKKIADLQSTNND 106
Query: 460 EKEQQHET-IPNQNPIINLSEKLNPRKRKFESHVVNTYSDTEQ 585
EK + H + + ++P+ + E + P K VV T SD +
Sbjct: 107 EKNEDHSSKVDLEDPVFH-GEIIVPGKHSKNMQVV-TDSDVRK 147
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 41.1 bits (92), Expect = 1e-04
Identities = 35/158 (22%), Positives = 72/158 (45%)
Frame = +1
Query: 109 TRLFVSNIPENTNEDELRCAFSKFGKVNSLDLKCKSSIEENKTFAFITLSASNYDIESYS 288
T +++ N+ E E F +FG++ SL L K ++ + F F+
Sbjct: 261 TNVYIKNLDTEITEQEFSDLFGQFGEITSLSL-VKDQNDKPRGFGFVN------------ 307
Query: 289 NSKMKLYSHFKCGI*KKSIKCFTSEEFKGSRLYVTRARESFLERLQRERNEAQRKETEKE 468
Y++ +C +K++ +E+KG +LYV RA++ ER + R ++ + EK
Sbjct: 308 ------YANHECA--QKAVDELNDKEYKGKKLYVGRAQKKH-EREEELRKRYEQMKLEKM 358
Query: 469 QQHETIPNQNPIINLSEKLNPRKRKFESHVVNTYSDTE 582
+++ + I NL ++++ + K E T + +
Sbjct: 359 NKYQGV--NLFIKNLQDEVDDERLKAEFSAFGTITSAK 394
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 37.9 bits (84), Expect = 0.001
Identities = 19/51 (37%), Positives = 28/51 (54%)
Frame = +1
Query: 106 GTRLFVSNIPENTNEDELRCAFSKFGKVNSLDLKCKSSIEENKTFAFITLS 258
G LFVS I EDEL+ FSKFG V + + + + ++ F F++ S
Sbjct: 100 GNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFS 150
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 36.7 bits (81), Expect = 0.003
Identities = 18/39 (46%), Positives = 23/39 (58%)
Frame = +1
Query: 91 LSMSPGTRLFVSNIPENTNEDELRCAFSKFGKVNSLDLK 207
L P T++FVSNI ++LR F FG+V LDLK
Sbjct: 88 LGPEPPTQVFVSNISPLVTSEQLRYHFKSFGEVFDLDLK 126
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 36.7 bits (81), Expect = 0.003
Identities = 15/50 (30%), Positives = 29/50 (58%)
Frame = +1
Query: 100 SPGTRLFVSNIPENTNEDELRCAFSKFGKVNSLDLKCKSSIEENKTFAFI 249
S +++ N+ + NED++ C FS+FG+ ++L ++K FAF+
Sbjct: 28 SDSAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFL 77
>SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 667
Score = 36.7 bits (81), Expect = 0.003
Identities = 20/87 (22%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
Frame = +1
Query: 412 LERLQRERN-----EAQRKETEKEQQHETIPNQNPIINLSEKLNPRKRKFESHVVNTYSD 576
L +LQR+R EA E++++ + + + ++N+ E L S + S+
Sbjct: 17 LRKLQRQRQTELLEEALDSESDEDDEFSSTSGKK-VVNVFEILEKENNAINSEAEKSVSE 75
Query: 577 TEQQHETIPNQNPIINLSEKLNPRKRK 657
EQ + ++PI++ ++K +K+K
Sbjct: 76 EEQDEPLVEGESPIVSTNKKAKNKKKK 102
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 36.3 bits (80), Expect = 0.004
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = +1
Query: 115 LFVSNIPENT--NEDELRCAFSKFGKVNSLDLKCKSSIEENKTFAFITLS 258
LFV N+ +N N +L FSKFG++ S L S E +K + F++ S
Sbjct: 421 LFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFS 470
Score = 25.8 bits (54), Expect = 6.0
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Frame = +1
Query: 115 LFVSNIPENTNEDELRCAFSKFGKVNSLDL----KCKSSIEENKT-FAFIT 252
++V N+P +L F FG + + K KS+ ++ T FAFIT
Sbjct: 22 IYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFIT 72
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 35.9 bits (79), Expect = 0.006
Identities = 43/167 (25%), Positives = 66/167 (39%), Gaps = 4/167 (2%)
Frame = +1
Query: 115 LFVSNIPENTNEDELRCAFSKFGKVNSLDLKCKSSIEENKTFAFI---TLSASNYDIESY 285
L+V +P E ++R FS+FG V L + +K +AFI +L +N E+
Sbjct: 107 LYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESLDVANVVAETM 166
Query: 286 SNSKMKLYSH-FKCGI*KKSIKCFTSEEFKGSRLYVTRARESFLERLQRERNEAQRKETE 462
N LY +C + + FKG+ + R + + RLQ E K
Sbjct: 167 HN--YLLYGKLLQCKVIPED--QVHENMFKGADVPFKRIPHATIARLQHE------KPLS 216
Query: 463 KEQQHETIPNQNPIINLSEKLNPRKRKFESHVVNTYSDTEQQHETIP 603
KE+ + I N KL +KRK + + SD P
Sbjct: 217 KEKADKLITRHN------RKLKLKKRKLKELGITLESDVSHPKAASP 257
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 34.7 bits (76), Expect = 0.013
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +1
Query: 115 LFVSNIPENTNEDELRCAFSKFGKVNSLDLKCKSSI 222
+F+ N+P + +E E+ AF KFGK+ + + K +I
Sbjct: 301 VFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSKKNI 336
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 34.3 bits (75), Expect = 0.017
Identities = 16/63 (25%), Positives = 31/63 (49%)
Frame = +1
Query: 97 MSPGTRLFVSNIPENTNEDELRCAFSKFGKVNSLDLKCKSSIEENKTFAFITLSASNYDI 276
+S RLF+ N+ + ED+L+ F FG++ + + K FA+I ++ +
Sbjct: 319 ISETKRLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAV 378
Query: 277 ESY 285
+Y
Sbjct: 379 RAY 381
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 115 LFVSNIPENTNEDELRCAFSKFGKVNSL 198
L V N P T+ +EL FS FG++ +
Sbjct: 508 LLVKNFPYGTSAEELTSLFSPFGELGRI 535
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 33.1 bits (72), Expect = 0.040
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +1
Query: 97 MSPGTRLFVSNIPENTNEDELRCAFSKFGKVNSLDLKCKSSIEENKTFAFITLS 258
M+ + LFV N+ T +D+L FS G + + EN+ + F+T S
Sbjct: 1 MNSNSTLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFS 54
Score = 26.2 bits (55), Expect = 4.5
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +1
Query: 112 RLFVSNIPENTNEDE-LRCAFSKFGKVNSLDLKCK 213
RL + N+P + + + L FSKFGKV + + K
Sbjct: 108 RLIIRNLPWSIKKPQHLEPHFSKFGKVREIKIPTK 142
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 33.1 bits (72), Expect = 0.040
Identities = 18/85 (21%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Frame = +1
Query: 412 LERLQRERNEAQRKETEKEQQHETIPNQNPIINLSEK--LNPRKRKFESHVVNTYSDTEQ 585
LE+L++ER Q ++ KE++ + + + L ++ LN +++ + +N +
Sbjct: 127 LEKLEKERIRLQEQQRRKEERDQKLREKEEAQRLRQEQILNKERQQLK---LNNFFTKGV 183
Query: 586 QHETIPNQNPIINLSEKLNPRKRKF 660
+ PN+N + + +++LN +++F
Sbjct: 184 EKRIAPNENFVADKTDELNEFEKEF 208
Score = 29.9 bits (64), Expect = 0.37
Identities = 26/99 (26%), Positives = 45/99 (45%)
Frame = +1
Query: 190 NSLDLKCKSSIEENKTFAFITLSASNYDIESYSNSKMKLYSHFKCGI*KKSIKCFTSEEF 369
+S D+ S N++ + SAS D Y K+ + K I S + ++
Sbjct: 24 SSTDITSLSVSSPNESVIHSSHSASEAD--EYV-CKLSYEGNRKKRIYNGSAEAGKEKKL 80
Query: 370 KGSRLYVTRARESFLERLQRERNEAQRKETEKEQQHETI 486
+ R R R+ ERL+RE+ QR++ +K ++ E I
Sbjct: 81 QKQRAQEERIRQKEAERLKREKERQQREQEKKLREQEKI 119
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 33.1 bits (72), Expect = 0.040
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +1
Query: 115 LFVSNIPENTNEDELRCAFSKFGKVNSLDLKCKSSIEENKTFAFIT 252
L V+N+ ++T E+ELR F +FG + + L K FAF++
Sbjct: 204 LRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVS 249
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 32.7 bits (71), Expect = 0.052
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +1
Query: 112 RLFVSNIPENTNEDELRCAFSKFGKVNSLDLKCKSSIEENKTFAFIT 252
++FV +P + E+E R F++FG+V L + F F+T
Sbjct: 248 KMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVT 294
Score = 29.9 bits (64), Expect = 0.37
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +1
Query: 112 RLFVSNIPENTNEDELRCAFSKFGKVNSLDLKCKSSIEENKTFAFIT 252
++F+ + T +D LR F +FG+V + S+ ++ F F+T
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLT 210
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 31.9 bits (69), Expect = 0.091
Identities = 15/56 (26%), Positives = 30/56 (53%)
Frame = +1
Query: 115 LFVSNIPENTNEDELRCAFSKFGKVNSLDLKCKSSIEENKTFAFITLSASNYDIES 282
LFV N+P++++ + L+ F + G+V S+ + + K +AF+ D+ S
Sbjct: 94 LFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEFINPKTDVIS 149
>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 589
Score = 31.5 bits (68), Expect = 0.12
Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +1
Query: 109 TRLFVSNIPE-NTNEDELRCAFSKFGKVNSLDL 204
T L V NIPE + NE+ +R FSKFG + ++L
Sbjct: 242 TALEVRNIPEEHFNEENIRSFFSKFGVLEKVEL 274
>SPCC1795.06 |map2||P-factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 201
Score = 31.1 bits (67), Expect = 0.16
Identities = 17/58 (29%), Positives = 35/58 (60%)
Frame = +1
Query: 517 EKLNPRKRKFESHVVNTYSDTEQQHETIPNQNPIINLSEKLNPRKRKFESHVVNTYSD 690
++ N +KR+FE+ TY+D + ++ + N +N ++ N +KR+FE+ +Y+D
Sbjct: 50 DRPNLKKREFEAAPAKTYADFLRAYQ---SWNTFVN-PDRPNLKKREFEAAPEKSYAD 103
Score = 31.1 bits (67), Expect = 0.16
Identities = 19/65 (29%), Positives = 37/65 (56%)
Frame = +1
Query: 496 NPIINLSEKLNPRKRKFESHVVNTYSDTEQQHETIPNQNPIINLSEKLNPRKRKFESHVV 675
N +N ++ N +KR+FE+ +Y+D + + + N +N ++ N +KR+FE+
Sbjct: 78 NTFVN-PDRPNLKKREFEAAPEKSYADFLRAYHS---WNTFVN-PDRPNLKKREFEAAPA 132
Query: 676 NTYSD 690
TY+D
Sbjct: 133 KTYAD 137
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 30.7 bits (66), Expect = 0.21
Identities = 39/180 (21%), Positives = 73/180 (40%), Gaps = 4/180 (2%)
Frame = +1
Query: 109 TRLFVSNIPEN--TNEDELRCAFSKFGKVNSLDLKCKSSIEENKTFAFITLSASNYDIES 282
+ L+V N+ + T + +L FS FG + S L C + +K + F+ IE+
Sbjct: 382 SNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFR----QIEA 437
Query: 283 YSNSKMKLYSHFKCGI*KKSIKCFTSEEFKGSRLYVTRARESFLERLQRERNEAQRKET- 459
+K L + G K+ CF E K R + R + F + E+ Q +
Sbjct: 438 AVRAKDTL-NGMMVGK-KRIFVCFA--ERKSDR--IRRLQAFFANKPTSEQTAQQDNKAL 491
Query: 460 -EKEQQHETIPNQNPIINLSEKLNPRKRKFESHVVNTYSDTEQQHETIPNQNPIINLSEK 636
K ++ T+ + PI + + K++ S V N +++ N +N ++
Sbjct: 492 FVKPERSSTVTIRKPIESSTNKISENPTTLSSKVENKNEPKTGENKEPSQTNEYVNCKQE 551
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 29.9 bits (64), Expect = 0.37
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +1
Query: 103 PGTRLFVSNIPENTNEDELRCAFSKFGKVNSLDLKCKSSIEENKTFAFI 249
P LFV + T +++L FS+FGK+ S + ++ +AFI
Sbjct: 242 PENVLFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFI 290
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 29.9 bits (64), Expect = 0.37
Identities = 16/56 (28%), Positives = 33/56 (58%)
Frame = +1
Query: 115 LFVSNIPENTNEDELRCAFSKFGKVNSLDLKCKSSIEENKTFAFITLSASNYDIES 282
LF+SNI +E++++ F ++ +++ L+C + + AFI L A+ DI++
Sbjct: 75 LFISNIDPEVSENDIKYLFQRYNFISARVLRCVDG--TSTSIAFIWL-ANESDIQN 127
Score = 27.9 bits (59), Expect = 1.5
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 109 TRLFVSNIPENTNEDELRCAFSKFGKV 189
T ++V +PEN ELR F FG++
Sbjct: 176 TAVYVHQLPENITTQELRSYFLHFGEI 202
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 29.5 bits (63), Expect = 0.49
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Frame = +1
Query: 103 PGTRLFVSNIPENTNEDELRCAFSKFGKVNSLDLKCKSSIEENKTFAFITLSASNYDIES 282
P ++V N+P +T+E+EL+ FS L + K N F+ Y +E+
Sbjct: 424 PCNTIYVGNLPPSTSEEELKVLFSTQVGYKRLCFRTKG----NGPMCFVEFENIPYAMEA 479
Query: 283 YSNSK-MKLYSHFKCGI 330
N + + L S K GI
Sbjct: 480 LKNLQGVCLSSSIKGGI 496
>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 413
Score = 29.5 bits (63), Expect = 0.49
Identities = 26/72 (36%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Frame = +1
Query: 352 FTSEEFKGSRLYVTRARESFLE---RLQRERNEAQRKETE--KEQQHETIP-NQNPIINL 513
F++ S YV RA ESF + RNE R+ T Q T P +NP +
Sbjct: 278 FSASPIDPSMSYVYRAPESFSSINANVPYGRNEYLRRVTSLVPNQPEYTGPYTRNPELRT 337
Query: 514 SEKLNPRKRKFE 549
S KL RKR+ E
Sbjct: 338 SHKLAERKRRKE 349
>SPAC6F12.03c |fsv1||SNARE Fsv1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 247
Score = 28.7 bits (61), Expect = 0.85
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = +1
Query: 385 YVTRARESFLERLQRERNEAQRKETEKEQQHETIP 489
Y R E+FL R+QR R E+ +E EK+++ +IP
Sbjct: 62 YRVRESEAFLIRMQR-RLESAEEEFEKQRRASSIP 95
>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1032
Score = 28.7 bits (61), Expect = 0.85
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +1
Query: 181 GKVNSLDLKCKSSIEENKTFAFITLSASNYDIESYSNSKMKLYSHFKCG 327
GK +L + KSS++ K + L N I+ Y + +KLY F G
Sbjct: 551 GKYFALKMIPKSSLDSLKKIKGLLLEKRNMHIQRYGPNTVKLYYAFDSG 599
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 28.3 bits (60), Expect = 1.1
Identities = 31/151 (20%), Positives = 70/151 (46%), Gaps = 1/151 (0%)
Frame = +1
Query: 187 VNSLDLKCKSSIEENKTFAFIT-LSASNYDIESYSNSKMKLYSHFKCGI*KKSIKCFTSE 363
VN L K KS+ ++ F + S N I S ++K+ + +K I ++
Sbjct: 1347 VNMLSHKRKSASTSDRRFVNASSTSGMNMPISSSISAKISSIQNSTKYSPRKPIP---AK 1403
Query: 364 EFKGSRLYVTRARESFLERLQRERNEAQRKETEKEQQHETIPNQNPIINLSEKLNPRKRK 543
+ + S L V R E L+ ++++ + + + +++ +P++ P++ + LN
Sbjct: 1404 DVRVSSL-VRRFEELSLQLQEKQKRDEELIKARRKRALPVVPSK-PVVEVFNDLNEAFDD 1461
Query: 544 FESHVVNTYSDTEQQHETIPNQNPIINLSEK 636
S N +DT++ T N + + ++S++
Sbjct: 1462 ENSEDENGINDTKENRATESNFSGVDSMSKE 1492
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 27.9 bits (59), Expect = 1.5
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -3
Query: 197 KLFTLPNLENAHRNSSSFVFSGIL 126
KL+ LP++E A S +FSGIL
Sbjct: 275 KLYLLPSIEKALLRSPEIIFSGIL 298
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 27.9 bits (59), Expect = 1.5
Identities = 16/79 (20%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Frame = +1
Query: 394 RARESFLERLQ--RERNEAQRKETEK-EQQHETIPNQNPIINLSEKLNPRKRKFESHVVN 564
R + +E+++ ++R +R+E E Q ++ + I L +++ +++ ES+
Sbjct: 748 RDEQLLVEKIEGIKKRILLKRREVNSLESQELSVLDTEKIQTLERRISETEKELESYAGQ 807
Query: 565 TYSDTEQQHETIPNQNPII 621
++H NQ P+I
Sbjct: 808 LQDAKNEEHRIRDNQRPVI 826
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 27.5 bits (58), Expect = 2.0
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = +1
Query: 115 LFVSNIPENTNEDELRCAFSKFGKVNSLDLKCKSSI 222
+F+ N+P EDE+R FG ++ + + + +I
Sbjct: 208 VFLGNLPNGITEDEIREDLEPFGPIDQIKIVTERNI 243
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 27.5 bits (58), Expect = 2.0
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +1
Query: 94 SMSPGTRLFVSNIPENTNEDELRCAFSKFGKVNS 195
S S +++ +P NT+++ L ++FGKV+S
Sbjct: 291 STSRTRNVYIRGLPPNTSDENLLLYTNRFGKVSS 324
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +1
Query: 112 RLFVSNIPENTNEDELRCAFSKFGKVNSLDLKCKSSIEENKTFAF 246
++++SN+P N ED++ FG + S L + +K F F
Sbjct: 311 KIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCF 355
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 27.1 bits (57), Expect = 2.6
Identities = 11/42 (26%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +1
Query: 115 LFVSN-IPENTNEDELRCAFSKFGKVNSLDLKCKSSIEENKT 237
L SN IPEN + +RC F ++++++ + +++ +T
Sbjct: 477 LSTSNVIPENNRQQFIRCVFHNIMQIHAVNSRLSNALNRTQT 518
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 27.1 bits (57), Expect = 2.6
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = +1
Query: 97 MSPGTRLFVSNIPENTNEDELRCAFSKFGKVNSLDLKCKSSIEENKTFAF 246
M+P ++V NIP E+++ F + G V S L + K + F
Sbjct: 1 MNPSCVVYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGF 50
>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 473
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +1
Query: 391 TRARESFLERLQRERNEAQRKETEKEQQHETIPNQNP 501
T R F+E ++R+R Q+++ + +QQ + Q+P
Sbjct: 286 TFQRLQFIENVRRKRAILQQRQMQMQQQQKAQQQQSP 322
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +1
Query: 541 KFESHVVNTYSDTEQQHETIPNQNPIINLSEK 636
KF+ ++ Y T+ + + + +NP+I LSEK
Sbjct: 225 KFDRGYISPYFITDVKSQKVEFENPLILLSEK 256
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 26.2 bits (55), Expect = 4.5
Identities = 20/99 (20%), Positives = 37/99 (37%)
Frame = +1
Query: 406 SFLERLQRERNEAQRKETEKEQQHETIPNQNPIINLSEKLNPRKRKFESHVVNTYSDTEQ 585
S R R+ R + T + + NLS LN +K + H V D+E
Sbjct: 272 SNFSRATSSRSSKTRSVVYEPNHRHTSFFGDTLSNLSSSLNDKKSPNDDHAV---LDSEL 328
Query: 586 QHETIPNQNPIINLSEKLNPRKRKFESHVVNTYSDTEKK 702
+T+P+ + ++ + + N +T +K
Sbjct: 329 MEQTLPDSAEAVEIANNVKEDIVSTANDDANELDNTSEK 367
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 26.2 bits (55), Expect = 4.5
Identities = 14/64 (21%), Positives = 32/64 (50%)
Frame = +1
Query: 112 RLFVSNIPENTNEDELRCAFSKFGKVNSLDLKCKSSIEENKTFAFITLSASNYDIESYSN 291
RLFV N+ + N++ L AFS++ + + + + + F F++ S+ ++++
Sbjct: 31 RLFVGNLGNDVNDESLYQAFSEYPSLVKTKV-VRDREGKTRGFGFVSFKDSDQFLKAWRE 89
Query: 292 SKMK 303
K
Sbjct: 90 KNGK 93
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 25.8 bits (54), Expect = 6.0
Identities = 15/55 (27%), Positives = 29/55 (52%)
Frame = +1
Query: 127 NIPENTNEDELRCAFSKFGKVNSLDLKCKSSIEENKTFAFITLSASNYDIESYSN 291
N+ E E+ +F+K +V+ L K + +I + TLS S +D+ ++S+
Sbjct: 1315 NLAEQKVEELQSQSFTKNKEVDLLRKKAQKAILKQADVVCATLSGSGHDLVAHSS 1369
>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 695
Score = 25.8 bits (54), Expect = 6.0
Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Frame = +1
Query: 97 MSPGTRLFVSNIPENTNEDELRCAFSKFGKVNSLDL-KCKSSIEENKTFAFITLSASN-- 267
+ P T+L + P++ + L F + G + + KC + ++ + + S
Sbjct: 277 VKPRTKLLLLGPPKSGKKTLLSRLFFQIGSFDPKTMQKCTVLNAKKESLSSVLKSTKTKW 336
Query: 268 YDIESYSNSKMKLYSHFKCGI 330
YD E++SNS F GI
Sbjct: 337 YDFETFSNSYSSTIIDFPLGI 357
>SPAC4H3.01 |||DNAJ domain protein Caj1/Djp1
type|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 25.8 bits (54), Expect = 6.0
Identities = 12/61 (19%), Positives = 28/61 (45%)
Frame = +1
Query: 406 SFLERLQRERNEAQRKETEKEQQHETIPNQNPIINLSEKLNPRKRKFESHVVNTYSDTEQ 585
SF++ + RE + A + ++Q + + P + ++ N RK+ + + EQ
Sbjct: 108 SFVKEMFREEDSAVEQGQMNDKQQLLLESSEPTPTIKQQFNDRKKNAQIREREALAKREQ 167
Query: 586 Q 588
+
Sbjct: 168 E 168
>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 436
Score = 25.4 bits (53), Expect = 7.9
Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 7/96 (7%)
Frame = +1
Query: 412 LERLQRERNEAQRKETEKEQQ--HETIPNQNPIINLSE-KLNPRKRKFESHVVNTYSD-- 576
LE +Q E +A K T++E Q + +P Q P N E N + F+
Sbjct: 180 LETVQ-ENPQAYSKVTQQEPQAGQKAVP-QEPQANQQETSSNQEESSFDRQETQDDKQKP 237
Query: 577 --TEQQHETIPNQNPIINLSEKLNPRKRKFESHVVN 678
T+Q+H + N+N + P+ R+ + V++
Sbjct: 238 KTTQQEHYNLRNRNQATITNSNSKPQTRRSKIFVIS 273
>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 960
Score = 25.4 bits (53), Expect = 7.9
Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Frame = +1
Query: 403 ESFLERLQRERNEAQRKETEKE-QQHETIPNQNPIINLSEKLNPRKRKFES----HVVNT 567
+ LE E NEA++ + EKE + + ++ + LS+K+ + +K +V
Sbjct: 79 KGLLEPFDAEDNEAKKMKREKEILRQQRQKRKSELTQLSQKVKEKFKKMRKKPARRIVTI 138
Query: 568 YSDTEQQHE 594
+D E++ +
Sbjct: 139 ANDEEEEDD 147
>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1009
Score = 25.4 bits (53), Expect = 7.9
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 6/34 (17%)
Frame = +1
Query: 202 LKCKSSIEENKTFA------FITLSASNYDIESY 285
L C SS+++N+TFA F+T A++Y E Y
Sbjct: 27 LTCLSSLQQNRTFATQPTDDFLTGGAADYVDEMY 60
>SPBC3F6.01c |||serine/threonine protein phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +3
Query: 24 CTHKYKLRIFNNFSQVFSM 80
C KY R FN FS+ FS+
Sbjct: 294 CRSKYNERTFNIFSETFSL 312
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,737,003
Number of Sequences: 5004
Number of extensions: 55400
Number of successful extensions: 264
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 261
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -