Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11k09
         (642 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0941 - 21717703-21718091,21718454-21718564,21718707-217187...    29   2.4  
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342...    29   4.1  
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327...    29   4.1  
03_05_0947 - 29081007-29081047,29081670-29081958,29083044-290834...    28   5.5  
03_05_0064 - 20385290-20385346,20385452-20387133,20387266-203880...    28   7.2  

>10_08_0941 -
           21717703-21718091,21718454-21718564,21718707-21718791,
           21718885-21719106,21719804-21720292,21722206-21722322
          Length = 470

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +2

Query: 524 LHWPRKHGTHGTSYRARGHKGKLCAHRRSKFLLNSITC 637
           + WP KH + G S+   G    +C  R  K  +N ++C
Sbjct: 128 VQWP-KHASRGVSFTKDGKFAAICTRRDCKDYVNLLSC 164


>12_01_0435 +
           3428552-3428636,3429242-3429352,3429434-3429738,
           3429821-3430230,3430323-3430556,3430934-3431378,
           3432300-3432390,3433292-3433518,3433786-3433861,
           3434009-3434134,3434221-3434384
          Length = 757

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +1

Query: 187 HHKYNLLDKRFSVTSSGVSENIACGSMTTDEEEIDPVG 300
           HH+  +  K + +  SG   + AC      E++I P+G
Sbjct: 276 HHRTEMNKKVYKIGKSGQESHAACTEFDRTEKDITPMG 313


>11_01_0427 +
           3274817-3274901,3275587-3275697,3275979-3276283,
           3276406-3276815,3276942-3277200
          Length = 389

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +1

Query: 187 HHKYNLLDKRFSVTSSGVSENIACGSMTTDEEEIDPVG 300
           HH+  +  K + +  SG   + AC      E++I P+G
Sbjct: 276 HHRTEMNKKVYKIGKSGQESHAACTEFDRTEKDITPMG 313


>03_05_0947 -
           29081007-29081047,29081670-29081958,29083044-29083424,
           29083935-29084129
          Length = 301

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 363 VWRTIPYSRSAAGILRSASSFSG 431
           +WRT+P  R    +L +ASSF+G
Sbjct: 113 MWRTVPGPRGGGVVLINASSFNG 135


>03_05_0064 -
           20385290-20385346,20385452-20387133,20387266-20388083,
           20388184-20388303,20389036-20389305,20390094-20390269
          Length = 1040

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/57 (24%), Positives = 23/57 (40%)
 Frame = +1

Query: 292 PVGNATSNVNSVDPGQFATKIDQRYGGQYLTPDQLPEFCAQLHHLVEVIRNIQSYAK 462
           P GN     +    G+   +   ++G   L+PD  P  C +    V  +  +  YAK
Sbjct: 151 PFGNKIDGYHG--EGRACPRDSSKWGNHSLSPDHAPTSCLRTEGEVPSLNRVSEYAK 205


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.317    0.132    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,714,039
Number of Sequences: 37544
Number of extensions: 302038
Number of successful extensions: 864
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)