Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11k06
         (712 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY075328-1|AAL68195.2|  372|Drosophila melanogaster GH10876p pro...    66   6e-11
AE014297-2430|AAF55486.1|  366|Drosophila melanogaster CG7780-PA...    66   6e-11
X17298-1|CAA35185.1| 1129|Drosophila melanogaster RNA polymerase...    33   0.29 
AY075569-1|AAL68376.1| 1129|Drosophila melanogaster SD02110p pro...    33   0.29 
AE014134-97|AAF51503.1| 1129|Drosophila melanogaster CG4033-PA p...    33   0.29 

>AY075328-1|AAL68195.2|  372|Drosophila melanogaster GH10876p
           protein.
          Length = 372

 Score = 65.7 bits (153), Expect = 6e-11
 Identities = 38/103 (36%), Positives = 60/103 (58%), Gaps = 3/103 (2%)
 Frame = +3

Query: 48  LFLFAFFINDSLCLTPQCRNEKGEPIDWFYVYKLPRERNHLNPLVR--RGVAYMHLTPSK 221
           LF++ F+ N++      C++E G  +DW+++YKLP+   H N L +   G+ Y+++T S+
Sbjct: 15  LFVWFFYQNEAKSKV-SCKDEAGNDVDWWHLYKLPKHYQH-NDLGKDTSGLKYLYVT-SQ 71

Query: 222 LRGGWIMSDLAISDPRSMVGRTLAPLYQD-KNIISLVYNDQPP 347
               W MS   ISDP S+  +TL PL  D  + +   YNDQ P
Sbjct: 72  NYDTWQMSGKFISDPLSLPAQTLNPLNDDPSHTLLAAYNDQQP 114



 Score = 64.9 bits (151), Expect = 1e-10
 Identities = 29/57 (50%), Positives = 38/57 (66%)
 Frame = +3

Query: 540 GHTKGVILGDKFTSLWLVHSVPRFPPIPDLIHGLNVSGYDYPTTGMKYGQSFLCVSV 710
           GH KGV+  D  T++W+VHSVP+FP IPD         Y YPT+G +Y QS LCV++
Sbjct: 123 GHAKGVVASDGETAIWIVHSVPKFPTIPD---------YSYPTSGEQYAQSMLCVTL 170


>AE014297-2430|AAF55486.1|  366|Drosophila melanogaster CG7780-PA
           protein.
          Length = 366

 Score = 65.7 bits (153), Expect = 6e-11
 Identities = 38/103 (36%), Positives = 60/103 (58%), Gaps = 3/103 (2%)
 Frame = +3

Query: 48  LFLFAFFINDSLCLTPQCRNEKGEPIDWFYVYKLPRERNHLNPLVR--RGVAYMHLTPSK 221
           LF++ F+ N++      C++E G  +DW+++YKLP+   H N L +   G+ Y+++T S+
Sbjct: 9   LFVWFFYQNEAKSKV-SCKDEAGNDVDWWHLYKLPKHYQH-NDLGKDTSGLKYLYVT-SQ 65

Query: 222 LRGGWIMSDLAISDPRSMVGRTLAPLYQD-KNIISLVYNDQPP 347
               W MS   ISDP S+  +TL PL  D  + +   YNDQ P
Sbjct: 66  NYDTWQMSGKFISDPLSLPAQTLNPLNDDPSHTLLAAYNDQQP 108



 Score = 64.9 bits (151), Expect = 1e-10
 Identities = 29/57 (50%), Positives = 38/57 (66%)
 Frame = +3

Query: 540 GHTKGVILGDKFTSLWLVHSVPRFPPIPDLIHGLNVSGYDYPTTGMKYGQSFLCVSV 710
           GH KGV+  D  T++W+VHSVP+FP IPD         Y YPT+G +Y QS LCV++
Sbjct: 117 GHAKGVVASDGETAIWIVHSVPKFPTIPD---------YSYPTSGEQYAQSMLCVTL 164


>X17298-1|CAA35185.1| 1129|Drosophila melanogaster RNA polymerase 3,
           second  largestsubunit protein.
          Length = 1129

 Score = 33.5 bits (73), Expect = 0.29
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = +3

Query: 522 KTRVENGHTKGVILGDKFTSLWLVHSV-PRFPPIPDLIHGLNVSGYDYPTTGMKYGQSFL 698
           K   E G   G I   KF +L    S   R P +P+LI  L+  G  +P + + YG    
Sbjct: 759 KAAYERGFAYGSIYKTKFLTLDKKSSYFARHPHMPELIKHLDTDGLPHPGSKLSYGSPLY 818

Query: 699 C 701
           C
Sbjct: 819 C 819


>AY075569-1|AAL68376.1| 1129|Drosophila melanogaster SD02110p
           protein.
          Length = 1129

 Score = 33.5 bits (73), Expect = 0.29
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = +3

Query: 522 KTRVENGHTKGVILGDKFTSLWLVHSV-PRFPPIPDLIHGLNVSGYDYPTTGMKYGQSFL 698
           K   E G   G I   KF +L    S   R P +P+LI  L+  G  +P + + YG    
Sbjct: 759 KAAYERGFAYGSIYKTKFLTLDKKSSYFARHPHMPELIKHLDTDGLPHPGSKLSYGSPLY 818

Query: 699 C 701
           C
Sbjct: 819 C 819


>AE014134-97|AAF51503.1| 1129|Drosophila melanogaster CG4033-PA
           protein.
          Length = 1129

 Score = 33.5 bits (73), Expect = 0.29
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = +3

Query: 522 KTRVENGHTKGVILGDKFTSLWLVHSV-PRFPPIPDLIHGLNVSGYDYPTTGMKYGQSFL 698
           K   E G   G I   KF +L    S   R P +P+LI  L+  G  +P + + YG    
Sbjct: 759 KAAYERGFAYGSIYKTKFLTLDKKSSYFARHPHMPELIKHLDTDGLPHPGSKLSYGSPLY 818

Query: 699 C 701
           C
Sbjct: 819 C 819


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,456,945
Number of Sequences: 53049
Number of extensions: 663405
Number of successful extensions: 1528
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1523
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3149551053
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)