Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11k06
(712 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L11247-6|AAA28005.2| 367|Caenorhabditis elegans Hypothetical pr... 61 7e-10
AF220526-1|AAF43009.1| 332|Caenorhabditis elegans DNAse II homo... 61 7e-10
Z46266-5|CAA86412.1| 375|Caenorhabditis elegans Hypothetical pr... 54 8e-08
Z27078-9|CAA81586.2| 378|Caenorhabditis elegans Hypothetical pr... 46 2e-05
Z27078-4|CAB76843.1| 373|Caenorhabditis elegans Hypothetical pr... 46 2e-05
Z19153-8|CAD45582.1| 378|Caenorhabditis elegans Hypothetical pr... 46 2e-05
AY303580-1|AAP57302.1| 373|Caenorhabditis elegans cell death-re... 46 2e-05
AF220525-1|AAF43008.1| 352|Caenorhabditis elegans DNAse II homo... 46 2e-05
U00065-2|AAL27237.1| 672|Caenorhabditis elegans Prion-like-(q/n... 30 1.4
AC006637-5|AAM54176.2| 844|Caenorhabditis elegans Glutamate rec... 28 5.7
>L11247-6|AAA28005.2| 367|Caenorhabditis elegans Hypothetical
protein F09G8.2 protein.
Length = 367
Score = 61.3 bits (142), Expect = 7e-10
Identities = 29/57 (50%), Positives = 32/57 (56%)
Frame = +3
Query: 540 GHTKGVILGDKFTSLWLVHSVPRFPPIPDLIHGLNVSGYDYPTTGMKYGQSFLCVSV 710
GH KGV L D T WL+HSVP FPPI + YP T KYGQSF C S+
Sbjct: 108 GHAKGVSLFDSTTGFWLIHSVPNFPPI---------KSFSYPNTAEKYGQSFFCASM 155
Score = 44.4 bits (100), Expect = 8e-05
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Frame = +3
Query: 96 QCRNEKGEPIDWFYVYKLPRERNHLNPLVRRGVAYMHLTPSKLRGGWIMSDLAISDPRSM 275
QC+N +G+ +DWF VYKLP+ L+ G +++ W + I+DP
Sbjct: 21 QCKNMRGKSVDWFVVYKLPK----LSGAGTSGKEFVYFDAES--SDWTRGN-DINDPNVA 73
Query: 276 VGRTLAPLYQ-DK-NIISLVYNDQPP 347
VG T++ +Y DK N +Y+D P
Sbjct: 74 VGATVSQVYSADKSNNFWFMYSDDDP 99
>AF220526-1|AAF43009.1| 332|Caenorhabditis elegans DNAse II homolog
F09G8.2 protein.
Length = 332
Score = 61.3 bits (142), Expect = 7e-10
Identities = 29/57 (50%), Positives = 32/57 (56%)
Frame = +3
Query: 540 GHTKGVILGDKFTSLWLVHSVPRFPPIPDLIHGLNVSGYDYPTTGMKYGQSFLCVSV 710
GH KGV L D T WL+HSVP FPPI + YP T KYGQSF C S+
Sbjct: 83 GHAKGVSLFDSTTGFWLIHSVPNFPPI---------KSFSYPNTAEKYGQSFFCASM 130
Score = 36.3 bits (80), Expect = 0.022
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Frame = +3
Query: 111 KGEPIDWFYVYKLPRERNHLNPLVRRGVAYMHLTPSKLRGGWIMSDLAISDPRSMVGRTL 290
+G+ +DWF VYKLP+ L+ G +++ W + I+DP VG T+
Sbjct: 1 RGKSVDWFVVYKLPK----LSGAGTSGKEFVYFDAES--SDWTRGN-DINDPNVAVGATV 53
Query: 291 APLYQ-DK-NIISLVYNDQPP 347
+ +Y DK N +Y+D P
Sbjct: 54 SQVYSADKSNNFWFMYSDDDP 74
>Z46266-5|CAA86412.1| 375|Caenorhabditis elegans Hypothetical
protein C07B5.5 protein.
Length = 375
Score = 54.4 bits (125), Expect = 8e-08
Identities = 26/56 (46%), Positives = 34/56 (60%)
Frame = +3
Query: 540 GHTKGVILGDKFTSLWLVHSVPRFPPIPDLIHGLNVSGYDYPTTGMKYGQSFLCVS 707
GHTKG I D + +WLVHSVP FP N + Y+YP +G YGQ+ LC++
Sbjct: 144 GHTKGTIFFDGTSGVWLVHSVPLFP---------NPTKYEYPVSGHDYGQTMLCMT 190
Score = 48.4 bits (110), Expect = 5e-06
Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Frame = +3
Query: 99 CRNEKGEPIDWFYVYKLPRERNHLNPL-VRRGVAYMHLTPSKLRGGWIMSDLAISDPRSM 275
C+++ G +DWF VYK+P E++ + + GVA+ ++ +K +G S + D
Sbjct: 25 CKDQSGNDVDWFAVYKMPIEKDDGSVTGLAGGVAWYYVDVNK-KGTLTPSAKTLDDNDQA 83
Query: 276 VGRTLAPLY---QDKNIISLVYNDQP 344
+ TL Y DK I ++YND+P
Sbjct: 84 IAYTLQQYYDKQNDKTIFHVMYNDEP 109
>Z27078-9|CAA81586.2| 378|Caenorhabditis elegans Hypothetical
protein K04H4.6b protein.
Length = 378
Score = 46.4 bits (105), Expect = 2e-05
Identities = 20/57 (35%), Positives = 34/57 (59%)
Frame = +3
Query: 537 NGHTKGVILGDKFTSLWLVHSVPRFPPIPDLIHGLNVSGYDYPTTGMKYGQSFLCVS 707
+GH KGV + D++T W++HS+P+FP D+ + +P+ YGQ +C+S
Sbjct: 113 SGHAKGVTVFDQYTGFWMIHSIPKFPS-KDM--------FRFPSNAHYYGQMGICIS 160
Score = 40.3 bits (90), Expect = 0.001
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 3/87 (3%)
Frame = +3
Query: 96 QCRNEKGEPIDWFYVYKLPRERNHL-NPLVRRGVAYMHLTPSKLRGGWIMSDLAISDPRS 272
QC++ G +DWF YKLP NH N + G +++ + W + + +
Sbjct: 20 QCKDNNGSNVDWFVFYKLPHLWNHPDNVPISNGTGFLYFDVN--NKNWKLMPQGMDVENN 77
Query: 273 MVGRTLAPLYQD--KNIISLVYNDQPP 347
V TL Y S +YND+ P
Sbjct: 78 AVYYTLQQYYNSNMNTTFSYMYNDEWP 104
>Z27078-4|CAB76843.1| 373|Caenorhabditis elegans Hypothetical
protein K04H4.6a protein.
Length = 373
Score = 46.4 bits (105), Expect = 2e-05
Identities = 20/57 (35%), Positives = 34/57 (59%)
Frame = +3
Query: 537 NGHTKGVILGDKFTSLWLVHSVPRFPPIPDLIHGLNVSGYDYPTTGMKYGQSFLCVS 707
+GH KGV + D++T W++HS+P+FP D+ + +P+ YGQ +C+S
Sbjct: 113 SGHAKGVTVFDQYTGFWMIHSIPKFPS-KDM--------FRFPSNAHYYGQMGICIS 160
Score = 40.3 bits (90), Expect = 0.001
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 3/87 (3%)
Frame = +3
Query: 96 QCRNEKGEPIDWFYVYKLPRERNHL-NPLVRRGVAYMHLTPSKLRGGWIMSDLAISDPRS 272
QC++ G +DWF YKLP NH N + G +++ + W + + +
Sbjct: 20 QCKDNNGSNVDWFVFYKLPHLWNHPDNVPISNGTGFLYFDVN--NKNWKLMPQGMDVENN 77
Query: 273 MVGRTLAPLYQD--KNIISLVYNDQPP 347
V TL Y S +YND+ P
Sbjct: 78 AVYYTLQQYYNSNMNTTFSYMYNDEWP 104
>Z19153-8|CAD45582.1| 378|Caenorhabditis elegans Hypothetical
protein K04H4.6b protein.
Length = 378
Score = 46.4 bits (105), Expect = 2e-05
Identities = 20/57 (35%), Positives = 34/57 (59%)
Frame = +3
Query: 537 NGHTKGVILGDKFTSLWLVHSVPRFPPIPDLIHGLNVSGYDYPTTGMKYGQSFLCVS 707
+GH KGV + D++T W++HS+P+FP D+ + +P+ YGQ +C+S
Sbjct: 113 SGHAKGVTVFDQYTGFWMIHSIPKFPS-KDM--------FRFPSNAHYYGQMGICIS 160
Score = 40.3 bits (90), Expect = 0.001
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 3/87 (3%)
Frame = +3
Query: 96 QCRNEKGEPIDWFYVYKLPRERNHL-NPLVRRGVAYMHLTPSKLRGGWIMSDLAISDPRS 272
QC++ G +DWF YKLP NH N + G +++ + W + + +
Sbjct: 20 QCKDNNGSNVDWFVFYKLPHLWNHPDNVPISNGTGFLYFDVN--NKNWKLMPQGMDVENN 77
Query: 273 MVGRTLAPLYQD--KNIISLVYNDQPP 347
V TL Y S +YND+ P
Sbjct: 78 AVYYTLQQYYNSNMNTTFSYMYNDEWP 104
>AY303580-1|AAP57302.1| 373|Caenorhabditis elegans cell
death-related nuclease 6 protein.
Length = 373
Score = 46.4 bits (105), Expect = 2e-05
Identities = 20/57 (35%), Positives = 34/57 (59%)
Frame = +3
Query: 537 NGHTKGVILGDKFTSLWLVHSVPRFPPIPDLIHGLNVSGYDYPTTGMKYGQSFLCVS 707
+GH KGV + D++T W++HS+P+FP D+ + +P+ YGQ +C+S
Sbjct: 113 SGHAKGVTVFDQYTGFWMIHSIPKFPS-KDM--------FRFPSNAHYYGQMGICIS 160
Score = 40.3 bits (90), Expect = 0.001
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 3/87 (3%)
Frame = +3
Query: 96 QCRNEKGEPIDWFYVYKLPRERNHL-NPLVRRGVAYMHLTPSKLRGGWIMSDLAISDPRS 272
QC++ G +DWF YKLP NH N + G +++ + W + + +
Sbjct: 20 QCKDNNGSNVDWFVFYKLPHLWNHPDNVPISNGTGFLYFDVN--NKNWKLMPQGMDVENN 77
Query: 273 MVGRTLAPLYQD--KNIISLVYNDQPP 347
V TL Y S +YND+ P
Sbjct: 78 AVYYTLQQYYNSNMNTTFSYMYNDEWP 104
>AF220525-1|AAF43008.1| 352|Caenorhabditis elegans DNAse II homolog
K04H4.6 protein.
Length = 352
Score = 46.4 bits (105), Expect = 2e-05
Identities = 20/57 (35%), Positives = 34/57 (59%)
Frame = +3
Query: 537 NGHTKGVILGDKFTSLWLVHSVPRFPPIPDLIHGLNVSGYDYPTTGMKYGQSFLCVS 707
+GH KGV + D++T W++HS+P+FP D+ + +P+ YGQ +C+S
Sbjct: 96 SGHAKGVTVFDQYTGFWMIHSIPKFPS-KDM--------FRFPSNAHYYGQMGICIS 143
Score = 40.3 bits (90), Expect = 0.001
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 3/87 (3%)
Frame = +3
Query: 96 QCRNEKGEPIDWFYVYKLPRERNHL-NPLVRRGVAYMHLTPSKLRGGWIMSDLAISDPRS 272
QC++ G +DWF YKLP NH N + G +++ + W + + +
Sbjct: 3 QCKDNNGSNVDWFVFYKLPHFWNHPDNVPISNGTGFLYFDVN--NKNWKLMPQGMDVENN 60
Query: 273 MVGRTLAPLYQD--KNIISLVYNDQPP 347
V TL Y S +YND+ P
Sbjct: 61 AVYYTLQQYYNSNMNTTFSYMYNDEWP 87
>U00065-2|AAL27237.1| 672|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 25
protein.
Length = 672
Score = 30.3 bits (65), Expect = 1.4
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Frame = -2
Query: 504 SCTFRQDRNHRSICRRA*TFYTFLSLIASFDLFCFLNTYRRQIVI--YRVGT-QLLAAGH 334
SC+F Q + ++C TF S+ S + C N + I VG+ Q L+
Sbjct: 357 SCSFSQQCLNNAVCTNNICVSTFCSVSCSTNQVCISNQCYNYVSIGSQCVGSQQCLSNSQ 416
Query: 333 CIQAI*CFCP 304
CI +I C CP
Sbjct: 417 CISSI-CQCP 425
>AC006637-5|AAM54176.2| 844|Caenorhabditis elegans Glutamate
receptor family (ampa)protein 6, isoform a protein.
Length = 844
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +3
Query: 126 DWFYVYKLPRERNHLNPLVRRGVAYMHLTPSKLRGGWIMSDLAISDP 266
+WF + L +HL+ G+ LT SK + W +DLAI P
Sbjct: 237 NWFLITALDDLNDHLSQYTHNGMRVSLLTVSKEK--WNQNDLAIKLP 281
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,095,977
Number of Sequences: 27780
Number of extensions: 335678
Number of successful extensions: 803
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -