Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11k03
         (729 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...   330   2e-91
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...   325   4e-90
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...   173   3e-44
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...   140   2e-34
SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein 2|S...    31   0.22 
SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces po...    30   0.39 
SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual        26   6.3  

>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score =  330 bits (810), Expect = 2e-91
 Identities = 144/217 (66%), Positives = 176/217 (81%)
 Frame = +1

Query: 79  MRECISIHAGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFFSETGAGK 258
           MRE ISIH GQAG QIGNACWELYCLEHGIQP+G M  +      D  F+TFFSETG GK
Sbjct: 1   MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60

Query: 259 HVPRAVFIDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLD 438
           +VPR++++DLEP V+D+VRTG YR LFHPEQLITGKEDA+NNYARGHYT+GKE+VD V D
Sbjct: 61  YVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTD 120

Query: 439 RVRKLADQCTGLQGFLIXXXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQISTA 618
           ++R++AD C+GLQGFL+              LL+ERL+++Y KKSKL+F++YPAPQ+ST+
Sbjct: 121 KIRRIADNCSGLQGFLVFHSFGGGTGSGFGALLLERLAMEYTKKSKLQFSVYPAPQVSTS 180

Query: 619 VVEPYNSILTTHTTLEHSDAAFMVDNEAIYDICRRNL 729
           VVEPYNS+LTTH TL+ +D  FMVDNE+ YDICRRNL
Sbjct: 181 VVEPYNSVLTTHATLDLADCTFMVDNESCYDICRRNL 217


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score =  325 bits (798), Expect = 4e-90
 Identities = 143/221 (64%), Positives = 177/221 (80%), Gaps = 4/221 (1%)
 Frame = +1

Query: 79  MRECISIHAGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGD----DSFNTFFSET 246
           MRE IS+H GQAGVQIGNACWELYCLEHGI PDG    +  V   +    D F TFFSET
Sbjct: 1   MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLNDGFGTFFSET 60

Query: 247 GAGKHVPRAVFIDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVD 426
           G GK VPR++++DLEP V+D+VRTG Y+ LFHPEQ++TGKEDA+NNYARGHYT+GKE++D
Sbjct: 61  GQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMID 120

Query: 427 LVLDRVRKLADQCTGLQGFLIXXXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQ 606
            VL+R+R++AD C+GLQGFL+              LL+ERL+++YGKKS L+F++YPAPQ
Sbjct: 121 SVLERIRRMADNCSGLQGFLVFHSFGGGTGSGLGALLLERLNMEYGKKSNLQFSVYPAPQ 180

Query: 607 ISTAVVEPYNSILTTHTTLEHSDAAFMVDNEAIYDICRRNL 729
           +ST+VVEPYNS+LTTH TL++SD  FMVDNEA YDICRRNL
Sbjct: 181 VSTSVVEPYNSVLTTHATLDNSDCTFMVDNEACYDICRRNL 221


>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score =  173 bits (420), Expect = 3e-44
 Identities = 86/217 (39%), Positives = 121/217 (55%)
 Frame = +1

Query: 79  MRECISIHAGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFFSETGAGK 258
           MRE + I AGQ G Q+G A W     EHG+   G      T     +  N +F+E   GK
Sbjct: 1   MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHG--TSEAQHERLNVYFNEAAGGK 58

Query: 259 HVPRAVFIDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLD 438
           +VPRAV +DLEP  +D V++G +  LF P+ +I G+  A N +A+GHYT G E+ D VLD
Sbjct: 59  YVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLD 118

Query: 439 RVRKLADQCTGLQGFLIXXXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQISTA 618
            VR+ A+ C  LQGF +              LL+ ++  +Y  +    F++ PAP+ S  
Sbjct: 119 VVRREAEACDALQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRMMATFSVAPAPKSSDT 178

Query: 619 VVEPYNSILTTHTTLEHSDAAFMVDNEAIYDICRRNL 729
           VVEPYN+ L+ H  +E+SD  F +DNEA+  I    L
Sbjct: 179 VVEPYNATLSMHQLVENSDETFCIDNEALSSIFANTL 215


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score =  140 bits (339), Expect = 2e-34
 Identities = 78/219 (35%), Positives = 122/219 (55%), Gaps = 3/219 (1%)
 Frame = +1

Query: 82  RECISIHAGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFFSETGAGKH 261
           RE I++ AGQ G QIG+  W+  CLEHGI PDG + S  T   G D  + FF ++   ++
Sbjct: 3   REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFAT--EGVDRKDVFFYQSDDTRY 60

Query: 262 VPRAVFIDLEPTVVDEVRTGTYRQLFHPEQLITGKE--DAANNYARGHYTIGKEIVDLVL 435
           +PRA+ IDLEP VV+ + + TY  L++PE ++  K    A NN+A G Y+  + I + ++
Sbjct: 61  IPRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDIM 119

Query: 436 DRVRKLADQCTGLQGFLIXXXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQ-IS 612
           D + + AD    L+GF +               L+ERL+  Y KK    ++++P  Q +S
Sbjct: 120 DMIDREADGSDSLEGFSLLHSIAGGTGSGLGSFLLERLNDRYPKKIIQTYSVFPNSQSVS 179

Query: 613 TAVVEPYNSILTTHTTLEHSDAAFMVDNEAIYDICRRNL 729
             VV+PYNS+L       ++D+  ++DN A+  I    L
Sbjct: 180 DVVVQPYNSLLALKRLTLNADSVVVLDNAALAHIAADRL 218


>SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein
           2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 30.7 bits (66), Expect = 0.22
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +1

Query: 559 YGKKSKLEFAIYPAPQISTAVVE-PYNSILTTHTTLEHSDAAFMVDN 696
           Y  + K+E   YP  +I   V + PYN +L   ++LE      ++DN
Sbjct: 110 YNSRWKIEIPSYPVREIPYVVADTPYNKLLCPLSSLEWVSKLILMDN 156


>SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 396

 Score = 29.9 bits (64), Expect = 0.39
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 557 STERRSIRSDAKPDPVPPPNEWKIRKP 477
           S +RR ++++  PD V PP  W +R P
Sbjct: 238 SDKRRFLKTNYSPDDVAPPPNWVLRYP 264


>SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 566

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -2

Query: 170 WMPCSRQYSSQHALPICTPAWPAWIDMHS 84
           W P        H +PI TPA+P+    H+
Sbjct: 286 WNPKLYPSDKAHRMPIITPAYPSMCATHN 314


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,060,171
Number of Sequences: 5004
Number of extensions: 63624
Number of successful extensions: 211
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)