Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11k03
         (729 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      25   0.55 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.9  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   6.8  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   9.0  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 25.4 bits (53), Expect = 0.55
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 527 HHSLWNVSPSIMVRNPNLNSRYIRH 601
           H  L+  SP +M  NP+   RY  H
Sbjct: 79  HQVLYQQSPYLMYENPDEEKRYQEH 103


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 581  SSLDFLP*STERRSIRSDAKPDPVPPPN 498
            SS+D    + ER + R    P P PPP+
Sbjct: 1336 SSIDSDYSTLERTAWRQQQPPPPPPPPS 1363


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +1

Query: 241 ETGAGKHVPRAVFIDLEPTVVDEVRTGTYRQL 336
           E  A  H+    + D+EPTV         RQL
Sbjct: 236 ERRAQSHLEAHCYFDIEPTVQQHQPVTVNRQL 267


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -2

Query: 533 SDAKPDPVPPP 501
           SD  P P PPP
Sbjct: 335 SDTPPKPAPPP 345


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,051
Number of Sequences: 438
Number of extensions: 4488
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)