Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11j23
         (642 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit...    27   1.7  
SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomy...    25   7.0  
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    25   7.0  
SPAC23G3.09 |taf4||transcription factor TFIID complex subunit Ta...    25   9.3  
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual     25   9.3  

>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ysh1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -2

Query: 224 LKSYKIFTVSIFLHKQLITFFSKCAIKDFH 135
           L+ +   T ++   KQ+I FFS   + +FH
Sbjct: 524 LRDFSDLTTTVLTQKQVIPFFSSMELANFH 553


>SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 596

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 11/40 (27%), Positives = 24/40 (60%)
 Frame = +3

Query: 498 DVVELDLANNKLTEWQEVFAILEQTPRVRFLNLSFNRLSA 617
           DV+ + L++N L     V  + +  P++  L+L+ NR+++
Sbjct: 215 DVISVSLSDNNLQSVTAVTTLAQTWPKLLNLSLANNRITS 254


>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 14/38 (36%), Positives = 25/38 (65%)
 Frame = +3

Query: 501 VVELDLANNKLTEWQEVFAILEQTPRVRFLNLSFNRLS 614
           +V LDL+ N+LT   E+   L + P++  LNL+ N+++
Sbjct: 358 LVSLDLSGNELT---EIPYALGELPQLCSLNLASNKIT 392


>SPAC23G3.09 |taf4||transcription factor TFIID complex subunit
           Taf4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 365

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
 Frame = -2

Query: 332 ALKGFQKRRHDRSFN*ESLETKSFFLNINSILKLFRLKSYKI---FTVSIFLHKQLITFF 162
           +L  F     DRS   + L +      +++I+ L RLKS        +S+ +   L    
Sbjct: 108 SLNTFALTTEDRSRKSDFLNSFVLMQTVSNIVNLHRLKSMDSDIHALISMAVRDYLANLL 167

Query: 161 SKCAIKDFHTVSKTH 117
            K  ++  H  S+ H
Sbjct: 168 QKMIVESHHRTSQLH 182


>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1029

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/44 (27%), Positives = 18/44 (40%)
 Frame = -2

Query: 380 WHVVN*WIYFALSAVFALKGFQKRRHDRSFN*ESLETKSFFLNI 249
           WH    W Y++L+ +F   G        S N      K+F  N+
Sbjct: 253 WHKCKKWAYYSLNRIFTRYGEPSSLVGDSANKYRAFAKNFITNV 296


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,374,554
Number of Sequences: 5004
Number of extensions: 43942
Number of successful extensions: 102
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)