Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11j23
         (642 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    27   0.12 
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    22   5.8  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    22   5.8  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 27.5 bits (58), Expect = 0.12
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +3

Query: 492 CADVVELDLANNKLTEWQEVFAILEQTPRVRFLNLSFNRLS 614
           C+D+ ELDL+ N+LT   +    L     ++ L+L  NR+S
Sbjct: 430 CSDLKELDLSGNELTSVPDA---LRDLALLKTLDLGENRIS 467



 Score = 22.6 bits (46), Expect = 3.3
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 495 ADVVELDLANNKLTEWQEVFAILE 566
           AD+  LDL+ N++T  QE   +L+
Sbjct: 212 ADIRILDLSRNEITRLQENSPLLD 235


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -2

Query: 248 NSILKLFRLKSYKIFTVSIFLHKQLITFFS 159
           N IL +      K+F     L +  ITFFS
Sbjct: 98  NQILHILWTSYKKVFMKDNILRQYFITFFS 127


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -2

Query: 248 NSILKLFRLKSYKIFTVSIFLHKQLITFFS 159
           N IL +      K+F     L +  ITFFS
Sbjct: 81  NQILHILWTSYKKVFMKDNILRQYFITFFS 110


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,726
Number of Sequences: 438
Number of extensions: 2634
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)