Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11j21
(687 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BT004883-1|AAO45239.1| 407|Drosophila melanogaster GH09439p pro... 213 2e-55
AE013599-559|AAF59157.1| 407|Drosophila melanogaster CG8725-PA ... 213 2e-55
AF129082-1|AAD28607.1| 407|Drosophila melanogaster COP9 signalo... 210 1e-54
AY071292-1|AAL48914.1| 513|Drosophila melanogaster RE32485p pro... 30 3.4
AY069196-1|AAL39341.1| 397|Drosophila melanogaster GH25458p pro... 30 3.4
AE014296-3379|AAN12133.1| 513|Drosophila melanogaster CG5130-PB... 30 3.4
AE014296-3378|AAF51612.1| 513|Drosophila melanogaster CG5130-PA... 30 3.4
AE014296-875|AAF47921.3| 397|Drosophila melanogaster CG32245-PA... 30 3.4
AY118636-1|AAM50005.1| 1238|Drosophila melanogaster SD02122p pro... 29 6.0
AJ271845-1|CAB76376.1| 1238|Drosophila melanogaster SMC1 protein... 29 6.0
AF225909-1|AAF43149.1| 1238|Drosophila melanogaster cohesin subu... 29 6.0
AE014297-3454|AAF56231.1| 1238|Drosophila melanogaster CG6057-PA... 29 6.0
BT021476-1|AAX33624.1| 1286|Drosophila melanogaster AT04667p pro... 29 7.9
AY113286-1|AAM29291.1| 608|Drosophila melanogaster AT20169p pro... 29 7.9
AE014297-3437|AAF56221.1| 608|Drosophila melanogaster CG5933-PA... 29 7.9
>BT004883-1|AAO45239.1| 407|Drosophila melanogaster GH09439p
protein.
Length = 407
Score = 213 bits (520), Expect = 2e-55
Identities = 105/166 (63%), Positives = 131/166 (78%)
Frame = +1
Query: 190 VNLQSVRQYLSELRNSGGLHKDQAEKYRNVLMEILKSTEQELSESLKAFIEAIVNENVSL 369
++ ++R L L N G HKDQA+KYR +L +L +T QEL + L+ F+EAIVNE+VSL
Sbjct: 7 ISTAALRSQLMGLINFTGTHKDQADKYRQLLKTVLTNTGQELIDGLRLFVEAIVNEHVSL 66
Query: 370 VISRQLLTDVSTHLALLADNVSQEVSHFALDVIQPRVISFEEQVASIRQHLADIYERNQN 549
VISRQ+L DV + L+ L D++S+ +SHF L+ + PRVISFEEQVA IR HLA+IYERNQ
Sbjct: 67 VISRQILNDVGSELSKLPDDLSKMLSHFTLEKVNPRVISFEEQVAGIRFHLANIYERNQQ 126
Query: 550 WKEAANVLVGIPLETGQKQYSVDYKLETYLKIARLYLEVDDPVQAE 687
W++AA VLVGIPLETGQKQYSV+ KL TYLKIARLYLE +D VQAE
Sbjct: 127 WRDAATVLVGIPLETGQKQYSVECKLGTYLKIARLYLEDNDSVQAE 172
>AE013599-559|AAF59157.1| 407|Drosophila melanogaster CG8725-PA
protein.
Length = 407
Score = 213 bits (520), Expect = 2e-55
Identities = 105/166 (63%), Positives = 131/166 (78%)
Frame = +1
Query: 190 VNLQSVRQYLSELRNSGGLHKDQAEKYRNVLMEILKSTEQELSESLKAFIEAIVNENVSL 369
++ ++R L L N G HKDQA+KYR +L +L +T QEL + L+ F+EAIVNE+VSL
Sbjct: 7 ISTAALRSQLMGLINFTGTHKDQADKYRQLLKTVLTNTGQELIDGLRLFVEAIVNEHVSL 66
Query: 370 VISRQLLTDVSTHLALLADNVSQEVSHFALDVIQPRVISFEEQVASIRQHLADIYERNQN 549
VISRQ+L DV + L+ L D++S+ +SHF L+ + PRVISFEEQVA IR HLA+IYERNQ
Sbjct: 67 VISRQILNDVGSELSKLPDDLSKMLSHFTLEKVNPRVISFEEQVAGIRFHLANIYERNQQ 126
Query: 550 WKEAANVLVGIPLETGQKQYSVDYKLETYLKIARLYLEVDDPVQAE 687
W++AA VLVGIPLETGQKQYSV+ KL TYLKIARLYLE +D VQAE
Sbjct: 127 WRDAATVLVGIPLETGQKQYSVECKLGTYLKIARLYLEDNDSVQAE 172
>AF129082-1|AAD28607.1| 407|Drosophila melanogaster COP9
signalosome subunit 4 CSN4 protein.
Length = 407
Score = 210 bits (514), Expect = 1e-54
Identities = 104/166 (62%), Positives = 130/166 (78%)
Frame = +1
Query: 190 VNLQSVRQYLSELRNSGGLHKDQAEKYRNVLMEILKSTEQELSESLKAFIEAIVNENVSL 369
++ ++R L N G HKDQA+KYR +L +L +T QEL + L+ F+EAIVNE+VSL
Sbjct: 7 ISTAALRSQQMGLINFTGTHKDQADKYRQLLKTVLTNTGQELIDGLRLFVEAIVNEHVSL 66
Query: 370 VISRQLLTDVSTHLALLADNVSQEVSHFALDVIQPRVISFEEQVASIRQHLADIYERNQN 549
VISRQ+L DV + L+ L D++S+ +SHF L+ + PRVISFEEQVA IR HLA+IYERNQ
Sbjct: 67 VISRQILNDVGSELSKLPDDLSKMLSHFTLEKVNPRVISFEEQVAGIRFHLANIYERNQQ 126
Query: 550 WKEAANVLVGIPLETGQKQYSVDYKLETYLKIARLYLEVDDPVQAE 687
W++AA VLVGIPLETGQKQYSV+ KL TYLKIARLYLE +D VQAE
Sbjct: 127 WRDAATVLVGIPLETGQKQYSVECKLGTYLKIARLYLEDNDSVQAE 172
>AY071292-1|AAL48914.1| 513|Drosophila melanogaster RE32485p
protein.
Length = 513
Score = 29.9 bits (64), Expect = 3.4
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +2
Query: 404 HT*HCWLIMFHRRFPTLHLMLYNPELF 484
H H W + HR T+H+ NP+L+
Sbjct: 333 HDLHIWQLAAHRYVATIHIQFQNPKLY 359
>AY069196-1|AAL39341.1| 397|Drosophila melanogaster GH25458p
protein.
Length = 397
Score = 29.9 bits (64), Expect = 3.4
Identities = 16/58 (27%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Frame = +1
Query: 205 VRQYLSELRNSGG-LHKDQAEKYRNVLMEILKSTEQELSESLKAFIEAIVNENVSLVI 375
+ Q S + N GG + + ++YRN +M+I + ++E+S+ + ++ +V+LVI
Sbjct: 22 MEQVSSMVSNGGGSVAMQRDDEYRNRIMKIRRLADEEISDKASTCGKLLIFLSVALVI 79
>AE014296-3379|AAN12133.1| 513|Drosophila melanogaster CG5130-PB,
isoform B protein.
Length = 513
Score = 29.9 bits (64), Expect = 3.4
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +2
Query: 404 HT*HCWLIMFHRRFPTLHLMLYNPELF 484
H H W + HR T+H+ NP+L+
Sbjct: 333 HDLHIWQLAAHRYVATIHIQFQNPKLY 359
>AE014296-3378|AAF51612.1| 513|Drosophila melanogaster CG5130-PA,
isoform A protein.
Length = 513
Score = 29.9 bits (64), Expect = 3.4
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +2
Query: 404 HT*HCWLIMFHRRFPTLHLMLYNPELF 484
H H W + HR T+H+ NP+L+
Sbjct: 333 HDLHIWQLAAHRYVATIHIQFQNPKLY 359
>AE014296-875|AAF47921.3| 397|Drosophila melanogaster CG32245-PA,
isoform A protein.
Length = 397
Score = 29.9 bits (64), Expect = 3.4
Identities = 16/58 (27%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Frame = +1
Query: 205 VRQYLSELRNSGG-LHKDQAEKYRNVLMEILKSTEQELSESLKAFIEAIVNENVSLVI 375
+ Q S + N GG + + ++YRN +M+I + ++E+S+ + ++ +V+LVI
Sbjct: 22 MEQVSSMVSNGGGSVAMQRDDEYRNRIMKIRRLADEEISDKASTCGKLLIFLSVALVI 79
>AY118636-1|AAM50005.1| 1238|Drosophila melanogaster SD02122p
protein.
Length = 1238
Score = 29.1 bits (62), Expect = 6.0
Identities = 25/102 (24%), Positives = 49/102 (48%), Gaps = 2/102 (1%)
Frame = +1
Query: 250 KDQAEKYRNVLMEILK-STEQELSESLKAFIEAIVNE-NVSLVISRQLLTDVSTHLALLA 423
K Q E+ + L E++K S +Q ++++ I+ + N S+V +S +
Sbjct: 701 KMQKERLQEELKELVKKSRKQSELATVESQIKGLENRLKYSMVDLESSKKSISQY----- 755
Query: 424 DNVSQEVSHFALDVIQPRVISFEEQVASIRQHLADIYERNQN 549
DN Q+V LD P+++ E ++ + +H+ +I E N
Sbjct: 756 DNQLQQVQS-QLDEFGPKILEIERRMQNREEHIQEIKENMNN 796
>AJ271845-1|CAB76376.1| 1238|Drosophila melanogaster SMC1 protein
protein.
Length = 1238
Score = 29.1 bits (62), Expect = 6.0
Identities = 25/102 (24%), Positives = 49/102 (48%), Gaps = 2/102 (1%)
Frame = +1
Query: 250 KDQAEKYRNVLMEILK-STEQELSESLKAFIEAIVNE-NVSLVISRQLLTDVSTHLALLA 423
K Q E+ + L E++K S +Q ++++ I+ + N S+V +S +
Sbjct: 701 KMQKERLQEELKELVKKSRKQSELATVESQIKGLENRLKYSMVDLESSKKSISQY----- 755
Query: 424 DNVSQEVSHFALDVIQPRVISFEEQVASIRQHLADIYERNQN 549
DN Q+V LD P+++ E ++ + +H+ +I E N
Sbjct: 756 DNQLQQVQS-QLDEFGPKILEIERRMQNREEHIQEIKENMNN 796
>AF225909-1|AAF43149.1| 1238|Drosophila melanogaster cohesin subunit
protein.
Length = 1238
Score = 29.1 bits (62), Expect = 6.0
Identities = 25/102 (24%), Positives = 49/102 (48%), Gaps = 2/102 (1%)
Frame = +1
Query: 250 KDQAEKYRNVLMEILK-STEQELSESLKAFIEAIVNE-NVSLVISRQLLTDVSTHLALLA 423
K Q E+ + L E++K S +Q ++++ I+ + N S+V +S +
Sbjct: 701 KMQKERLQEELKELVKKSRKQSELATVESQIKGLENRLKYSMVDLESSKKSISQY----- 755
Query: 424 DNVSQEVSHFALDVIQPRVISFEEQVASIRQHLADIYERNQN 549
DN Q+V LD P+++ E ++ + +H+ +I E N
Sbjct: 756 DNQLQQVQS-QLDEFGPKILEIERRMQNREEHIQEIKENMNN 796
>AE014297-3454|AAF56231.1| 1238|Drosophila melanogaster CG6057-PA
protein.
Length = 1238
Score = 29.1 bits (62), Expect = 6.0
Identities = 25/102 (24%), Positives = 49/102 (48%), Gaps = 2/102 (1%)
Frame = +1
Query: 250 KDQAEKYRNVLMEILK-STEQELSESLKAFIEAIVNE-NVSLVISRQLLTDVSTHLALLA 423
K Q E+ + L E++K S +Q ++++ I+ + N S+V +S +
Sbjct: 701 KMQKERLQEELKELVKKSRKQSELATVESQIKGLENRLKYSMVDLESSKKSISQY----- 755
Query: 424 DNVSQEVSHFALDVIQPRVISFEEQVASIRQHLADIYERNQN 549
DN Q+V LD P+++ E ++ + +H+ +I E N
Sbjct: 756 DNQLQQVQS-QLDEFGPKILEIERRMQNREEHIQEIKENMNN 796
>BT021476-1|AAX33624.1| 1286|Drosophila melanogaster AT04667p
protein.
Length = 1286
Score = 28.7 bits (61), Expect = 7.9
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
Frame = -2
Query: 443 TSCETLSASSAKCVLTSVK-------SCLEITRLTFSLTIASMNAFNDSDNSCSVLFSIS 285
TS +TLS ++AK VL K +CL +TR+T+ L+IA+ + + S+L
Sbjct: 153 TSVDTLSPNTAKAVLELQKRCRADKLACLSLTRVTY-LSIANDLQEVEEPDRASILHDTD 211
Query: 284 IRTLRYFSA*SLCKPPEFLNSLKYWRTLCKLTG 186
+ A S P E L +L+ + L ++ G
Sbjct: 212 LLVAPNSPAES--SPDEELMALQLGKKLAQVLG 242
>AY113286-1|AAM29291.1| 608|Drosophila melanogaster AT20169p
protein.
Length = 608
Score = 28.7 bits (61), Expect = 7.9
Identities = 16/84 (19%), Positives = 43/84 (51%)
Frame = +1
Query: 217 LSELRNSGGLHKDQAEKYRNVLMEILKSTEQELSESLKAFIEAIVNENVSLVISRQLLTD 396
+ L+ +++ EK + +EIL +++L+ K +EA + ++ Q L+
Sbjct: 7 IKSLKTKRNTLREKLEKRKKERIEILSDIQEDLTNPKKELVEADLEVQKEVL---QALSS 63
Query: 397 VSTHLALLADNVSQEVSHFALDVI 468
S L +++ V ++++ +L+++
Sbjct: 64 CSLALPIVSTQVVEKIAGSSLEMV 87
>AE014297-3437|AAF56221.1| 608|Drosophila melanogaster CG5933-PA
protein.
Length = 608
Score = 28.7 bits (61), Expect = 7.9
Identities = 16/84 (19%), Positives = 43/84 (51%)
Frame = +1
Query: 217 LSELRNSGGLHKDQAEKYRNVLMEILKSTEQELSESLKAFIEAIVNENVSLVISRQLLTD 396
+ L+ +++ EK + +EIL +++L+ K +EA + ++ Q L+
Sbjct: 7 IKSLKTKRNTLREKLEKRKKERIEILSDIQEDLTNPKKELVEADLEVQKEVL---QALSS 63
Query: 397 VSTHLALLADNVSQEVSHFALDVI 468
S L +++ V ++++ +L+++
Sbjct: 64 CSLALPIVSTQVVEKIAGSSLEMV 87
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,493,194
Number of Sequences: 53049
Number of extensions: 530003
Number of successful extensions: 1374
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1374
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 3013199100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -