Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11j21
(687 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024826-18|AAF60803.1| 412|Caenorhabditis elegans Cop-9 signal... 55 5e-08
U23452-4|ABE73334.1| 1316|Caenorhabditis elegans Hypothetical pr... 41 0.001
U23452-3|AAU87818.1| 1982|Caenorhabditis elegans Hypothetical pr... 41 0.001
U23452-2|AAU87819.1| 1987|Caenorhabditis elegans Hypothetical pr... 41 0.001
Z73424-4|CAA97778.2| 954|Caenorhabditis elegans Hypothetical pr... 32 0.44
AC084158-24|AAM15622.1| 245|Caenorhabditis elegans Hypothetical... 29 2.4
U58726-1|AAB00575.2| 215|Caenorhabditis elegans Hypothetical pr... 29 3.1
>AC024826-18|AAF60803.1| 412|Caenorhabditis elegans Cop-9
signalosome subunit protein 4 protein.
Length = 412
Score = 54.8 bits (126), Expect = 5e-08
Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 10/157 (6%)
Frame = +1
Query: 247 HKDQAEKYRNVLMEILKSTEQ---ELSESLKAFIEAIVNENVSLVISRQLLTDVSTHL-- 411
HK Q E + + L + +E +K I E S+V+SRQ ++ ++ L
Sbjct: 21 HKAQYEALAKLCNKYLPQNAMGRVDTAEIIKIIDTVIALETGSMVVSRQFVSLITERLDN 80
Query: 412 ALLADNVSQEVSHFALDVIQPRVISFEEQVASIRQHLADIYERNQNWKEAANVLVGIPLE 591
L + +S L +I+ R IS+E+QV +R LA +YE+ K+AA L+ I +
Sbjct: 81 QHLESECVKAISEGILAIIKTRTISYEDQVCILRLMLASLYEKEGRIKDAAQALIAINSD 140
Query: 592 T-----GQKQYSVDYKLETYLKIARLYLEVDDPVQAE 687
T G + K + ++I +L L+ + +AE
Sbjct: 141 TSPKFNGPQAAKEGAKAQLCIRITKLLLDCSEIDEAE 177
>U23452-4|ABE73334.1| 1316|Caenorhabditis elegans Hypothetical
protein R07G3.3c protein.
Length = 1316
Score = 40.7 bits (91), Expect = 0.001
Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 7/96 (7%)
Frame = +1
Query: 175 EIKMPVNLQSV-RQYLSELRNSGGLHKDQAEKYRNVLME---ILKSTEQELSESLKAFIE 342
EI+ LQ V + + E +N+ L KDQ E NVL+E +L+ + E+ A +
Sbjct: 259 EIRCQTELQRVMKSSMEESKNAADLFKDQLEAQENVLVEVRKVLQEHQDEMERENLAHAD 318
Query: 343 AIVNENVSLVISRQLLTDVSTHLALLAD---NVSQE 441
AI + + L +R L V+ + ++D NVS+E
Sbjct: 319 AIKHRDEELAQTRAELVKVTEMMKSMSDVKLNVSEE 354
>U23452-3|AAU87818.1| 1982|Caenorhabditis elegans Hypothetical
protein R07G3.3a protein.
Length = 1982
Score = 40.7 bits (91), Expect = 0.001
Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 7/96 (7%)
Frame = +1
Query: 175 EIKMPVNLQSV-RQYLSELRNSGGLHKDQAEKYRNVLME---ILKSTEQELSESLKAFIE 342
EI+ LQ V + + E +N+ L KDQ E NVL+E +L+ + E+ A +
Sbjct: 259 EIRCQTELQRVMKSSMEESKNAADLFKDQLEAQENVLVEVRKVLQEHQDEMERENLAHAD 318
Query: 343 AIVNENVSLVISRQLLTDVSTHLALLAD---NVSQE 441
AI + + L +R L V+ + ++D NVS+E
Sbjct: 319 AIKHRDEELAQTRAELVKVTEMMKSMSDVKLNVSEE 354
>U23452-2|AAU87819.1| 1987|Caenorhabditis elegans Hypothetical
protein R07G3.3b protein.
Length = 1987
Score = 40.7 bits (91), Expect = 0.001
Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 7/96 (7%)
Frame = +1
Query: 175 EIKMPVNLQSV-RQYLSELRNSGGLHKDQAEKYRNVLME---ILKSTEQELSESLKAFIE 342
EI+ LQ V + + E +N+ L KDQ E NVL+E +L+ + E+ A +
Sbjct: 259 EIRCQTELQRVMKSSMEESKNAADLFKDQLEAQENVLVEVRKVLQEHQDEMERENLAHAD 318
Query: 343 AIVNENVSLVISRQLLTDVSTHLALLAD---NVSQE 441
AI + + L +R L V+ + ++D NVS+E
Sbjct: 319 AIKHRDEELAQTRAELVKVTEMMKSMSDVKLNVSEE 354
>Z73424-4|CAA97778.2| 954|Caenorhabditis elegans Hypothetical
protein C44B9.1 protein.
Length = 954
Score = 31.9 bits (69), Expect = 0.44
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Frame = +1
Query: 259 AEKYRNVLM--EILKSTEQELSESLKAFIEAIVNENVSLVISR 381
+EKYR V E+L+ TEQ + L AF+EAI ++V+S+
Sbjct: 273 SEKYRFVYTAYEMLEKTEQVAEKLLTAFVEAIETTTSAVVLSK 315
>AC084158-24|AAM15622.1| 245|Caenorhabditis elegans Hypothetical
protein Y69A2AR.6 protein.
Length = 245
Score = 29.5 bits (63), Expect = 2.4
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Frame = +1
Query: 307 QELSESLKAFIEAIVN-ENVSLVISRQLLTDVSTHLAL-LADNVSQEVSHFALDVIQPRV 480
+E E L + I +I++ N+ +VI++ D+ HL + + Q F Q R+
Sbjct: 98 EEALEFLNSKIRSIMDYSNIQMVIAQSNAYDLLGHLQPDILKFIKQHNETFPT-AQQQRM 156
Query: 481 ISFEEQVASIRQHLADIYER 540
I QV +RQ +AD ER
Sbjct: 157 IDIRRQVDDVRQVMADNVER 176
>U58726-1|AAB00575.2| 215|Caenorhabditis elegans Hypothetical
protein T01C8.3 protein.
Length = 215
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = -2
Query: 473 GCITSSAKWETSCETLSASSAKCVLTSVKSCLEITRL 363
GC TS C T S S C+ S C E+T +
Sbjct: 7 GCFTSPTDLPLGCSTNSRGSIFCICNSTDYCNEMTNV 43
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,494,416
Number of Sequences: 27780
Number of extensions: 291232
Number of successful extensions: 858
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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