Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11j19
         (597 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    28   0.90 
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom...    27   1.6  
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po...    26   3.6  
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha...    25   6.3  
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo...    25   6.3  
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   6.3  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   6.3  
SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein Pvg5|Schizos...    25   8.4  

>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 28.3 bits (60), Expect = 0.90
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +1

Query: 520 WMESYMQLLYHWKLY 564
           W ESY +LL  WKLY
Sbjct: 730 WTESYRELLNRWKLY 744


>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 703

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
 Frame = -3

Query: 577 HNTLNTISNDITIAYKIPSKQKSPNRHARSATTLTDRYSW------IAATLRLADSWFGT 416
           HN+L +I  ++  +   PS   SP        T+ +R SW       A+T  L+ +  GT
Sbjct: 237 HNSLPSIRTNVRYSNSKPSTPLSPEDVDLGTYTVKNRDSWSNEVNLSASTNNLSTNTSGT 296

Query: 415 IRRAGLATVRPACWNR 368
           ++   L++ R + +++
Sbjct: 297 LKPYSLSSSRSSSYSK 312


>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 449

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = -3

Query: 589 KRLLHNTLNTISNDITIAYKIPSKQKSPNRHARSATTLTDRYS 461
           +R L +  + +   + ++ +IPSK+KS N      +T+  RYS
Sbjct: 42  RRGLISGASLVKRRMLVSVEIPSKEKSYNAFLHWMSTVPKRYS 84


>SPAC4F8.11 |||WD repeat protein, human WDR24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 846

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = -2

Query: 254 VEQGAGKGNTLLQDTRSKPSSRYTMQHRALSCTDNMHHMAFQSKHR 117
           +++G    N    D+R+  +S Y +   A + +   H+  F S HR
Sbjct: 581 LKKGQAPVNNFSTDSRASINSSYLLDSAASNYSGTSHNEMFNSFHR 626


>SPBC4.03c |||COPII-coated vesicle component Sfb3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +1

Query: 229 FPLPAPCSTVSRALSADTSITKPTSVPSM*KTGY 330
           +P P+  S +  + S DT++  P ++PS  +  Y
Sbjct: 93  YPTPSTPSVLPESFSNDTNLLDPAALPSAPEVRY 126


>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 860

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = -2

Query: 215 DTRSKPSSRYTMQHRALSCTDNMHHMAFQSKHRDRSCRKE 96
           DT S  SS     H ALS  D  +  A  +     SCR++
Sbjct: 235 DTSSSLSSSSHPSHEALSTIDTKNLQALAASAAPSSCRQQ 274


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +1

Query: 202 LLRVSWRRVFPLPAP 246
           L RV W+RV PLP P
Sbjct: 855 LKRVHWQRVDPLPGP 869


>SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein
           Pvg5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 372

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 237 ARPLFDRVQSLVCRYQYYQTYLRALHV 317
           A+ LFD V S V +Y Y+ T +  +H+
Sbjct: 290 AKLLFDYVVSQVVKYPYFVTDIYQIHL 316


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,260,230
Number of Sequences: 5004
Number of extensions: 43265
Number of successful extensions: 155
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)