Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11j18
         (647 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0508 + 4424607-4424800,4425067-4425111,4425587-4425677,442...    31   1.0  
07_03_1176 + 24567720-24570932                                         28   5.6  
10_08_0343 - 16960764-16960895,16961166-16961171,16961272-169616...    27   9.7  
01_01_0832 - 6500139-6500333,6500610-6500875,6501494-6501815,650...    27   9.7  

>08_01_0508 +
           4424607-4424800,4425067-4425111,4425587-4425677,
           4425791-4425850,4427031-4427150,4427332-4427583
          Length = 253

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = -1

Query: 377 PETHATVIWRNIKRFRSAVNPSNALLLPIELADQFLD---RLAPPSAPLN 237
           PE+HA V+   I+ +R A++    L LP     ++L    ++   S PLN
Sbjct: 94  PESHAAVVKTAIRNYRKAIDEGLLLKLPFTTIFEYLQAKHKIESASGPLN 143


>07_03_1176 + 24567720-24570932
          Length = 1070

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 33/100 (33%), Positives = 42/100 (42%), Gaps = 3/100 (3%)
 Frame = -1

Query: 302 LLPIELADQFLDRLAPPS---APLNDPILSYKQYNSDAPSSLNLTFTLGELKGVLNHVKD 132
           LL ++L+   L    PP+   A L    LSY Q N   P+SL     L  L    N +  
Sbjct: 127 LLVLDLSGNRLQGEIPPALACAGLQTLDLSYNQLNGSVPASLGALPGLRRLSLASNRLGG 186

Query: 131 SAPGEDGIPYSFLSHLGEKGLNYFLNLINKILLTGDIPPS 12
           + P E       L   G + L Y L+L    LL G IP S
Sbjct: 187 AIPDE-------LGGAGCRSLQY-LDLSGN-LLVGGIPRS 217


>10_08_0343 -
           16960764-16960895,16961166-16961171,16961272-16961640,
           16962118-16962304,16962567-16962759,16962864-16963137,
           16963215-16963374,16963985-16964199,16964784-16964876,
           16965192-16965260,16965293-16965445,16965534-16965737,
           16966416-16966691,16967336-16967431,16967585-16967788,
           16967877-16968069,16968229-16968374,16968771-16969425,
           16971462-16971774,16971989-16972139,16972602-16973815,
           16973933-16974182,16974784-16975035
          Length = 1934

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 7/72 (9%)
 Frame = -1

Query: 218 KQYNSDAPSSLNLTFTL---GELKGVLNHVKDSAPGE-DGIPYSF---LSHLGEKGLNYF 60
           K+   D     +LTF L   G+LK +    ++  PG  D   +S+   L +L E+  +  
Sbjct: 295 KRVERDPTIMHHLTFALSISGQLKSLAVQFEELLPGMLDKREWSYNVALCYLAEEDDSTA 354

Query: 59  LNLINKILLTGD 24
           LNL+ +IL +GD
Sbjct: 355 LNLLKRILKSGD 366


>01_01_0832 - 6500139-6500333,6500610-6500875,6501494-6501815,
            6501915-6502156,6502229-6502457,6503020-6503184,
            6503279-6503605,6504150-6504191,6504333-6504400,
            6504748-6504934,6506249-6506311,6506748-6506790,
            6506919-6507019,6507110-6507184,6507359-6507445,
            6507593-6507682,6507906-6507992,6508585-6508783,
            6509113-6509177,6509502-6509606,6509726-6509871,
            6510100-6510224,6510335-6510437,6510482-6510596,
            6510734-6510869,6511298-6511387,6511484-6511578,
            6511698-6511763,6511868-6511936,6512034-6512147,
            6512241-6512448,6512545-6512600,6512818-6513552
          Length = 1671

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
 Frame = -3

Query: 636  LGDFNSHHTSWGSSVSNSYGYELLDILDMYS--LCILNSGSPTRLTKPGEVISAIDLSIC 463
            LG+F+      GSS+S     + ++I+   +    + ++GSPT+ + P  V+   +L++ 
Sbjct: 1330 LGEFDDLLDGNGSSLSKPDNIDGINIIFKSTGPTVLSSNGSPTQ-SNPSMVLEICNLTLL 1388

Query: 462  TPQLASSLSWSTLCSTYNSDH 400
            TP+  + L           DH
Sbjct: 1389 TPRSGNILITDLTMELKEKDH 1409


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,351,433
Number of Sequences: 37544
Number of extensions: 326599
Number of successful extensions: 738
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)