Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11j18
         (647 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    56   2e-08
AF016663-5|AAC70880.1|  864|Caenorhabditis elegans Hypothetical ...    36   0.033
AF024498-7|AAF39806.2|  279|Caenorhabditis elegans Serpentine re...    30   1.6  
AF016443-13|AAC24275.2|  333|Caenorhabditis elegans Serpentine r...    27   8.7  

>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 34/86 (39%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
 Frame = -3

Query: 642 MILGDFNSHHTSWGSSVS-NSYGYELLDILDMY-SLCILNSGSPTRLTKPGEVISAIDLS 469
           +I GD N+HH++W S  S ++ G EL +++D++  L I N    TR       IS+ D++
Sbjct: 35  IISGDVNAHHSAWHSEGSEDTRGRELAELIDLHPDLIIQNEQVHTRADTYS--ISSPDIT 92

Query: 468 ICTPQLASSLSWSTLCSTYNSDHYPI 391
           ICT  LA+   WSTL     SDH P+
Sbjct: 93  ICTADLATKCHWSTLYK-LGSDHIPM 117


>AF016663-5|AAC70880.1|  864|Caenorhabditis elegans Hypothetical
           protein F21E9.5 protein.
          Length = 864

 Score = 35.5 bits (78), Expect = 0.033
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = -1

Query: 176 FTLGELKGVLNHVKDS-APGEDGIPYSFLSHLGEKGLNYFLNLINKILLTGDIPPSWRS 3
           F  GE++  +N   +  A G D I   FL   G+  +       N+ L +G+IP  W++
Sbjct: 396 FLFGEIRAAINSFPNGKAAGSDKITADFLKSCGDYVIRLITGRFNRYLESGNIPKDWKT 454


>AF024498-7|AAF39806.2|  279|Caenorhabditis elegans Serpentine
           receptor, class x protein104 protein.
          Length = 279

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/55 (29%), Positives = 29/55 (52%)
 Frame = +2

Query: 5   FAMTVECHLSVKFYLLNLKSNLILFRQGETKRNMESHLPLEHCL*RDLIHLLTPL 169
           F   +   +++K YL++  SNL+  R  +T+     +L L+ C  +D I +L  L
Sbjct: 182 FTNVLNVSIAIKLYLISKSSNLLSSRASKTRNKNRVYLFLQSCF-QDWIAVLVIL 235


>AF016443-13|AAC24275.2|  333|Caenorhabditis elegans Serpentine
           receptor, class h protein190 protein.
          Length = 333

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +2

Query: 8   AMTVECHLSVKFYLLNLKSNLILF 79
           A T +   SVK YLLNL S+++LF
Sbjct: 41  AKTEDQMKSVKMYLLNLHSSIVLF 64


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,311,775
Number of Sequences: 27780
Number of extensions: 303129
Number of successful extensions: 737
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)