Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11j17
(701 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom... 29 0.49
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|... 29 0.64
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc... 29 0.64
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid... 28 1.1
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|... 27 2.6
SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|c... 27 2.6
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 27 2.6
SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr... 26 4.5
SPBC713.05 |||WD repeat protein, human MAPK organizer 1 |Schizos... 26 6.0
SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyc... 25 7.9
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1... 25 7.9
SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces pomb... 25 7.9
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 25 7.9
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ... 25 7.9
>SPAC959.03c |||U3 snoRNP-associated protein
Utp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 520
Score = 29.5 bits (63), Expect = 0.49
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +2
Query: 560 SPGISSYSTPFITQRSPALSLGLTADQTKMAVGYGDSSIKVYDMET 697
SP ++ +T R P L + D M DS +KV+D+ T
Sbjct: 251 SPSSTTPLVKMLTHRGPVRDLAVNRDGRYMVTAGADSLLKVWDLRT 296
>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 612
Score = 29.1 bits (62), Expect = 0.64
Identities = 8/27 (29%), Positives = 19/27 (70%)
Frame = +2
Query: 620 LGLTADQTKMAVGYGDSSIKVYDMETQ 700
L ++ +++A+ Y D +++ YD++TQ
Sbjct: 439 LSMSVTDSRIAIAYNDGNVRFYDLDTQ 465
>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 490
Score = 29.1 bits (62), Expect = 0.64
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Frame = +2
Query: 527 ALESFNMQFYGSPGISSYSTP-----FITQRSPALSLGLTADQTKMAVGYGDSSIKVYDM 691
ALE F+ +FY + + ++ + S+ + D + +A GD + KV+D+
Sbjct: 150 ALELFDSRFYDRQNEENQPSARRIHGWLAHNNAIFSVNFSKDDSLLATSSGDQTSKVFDL 209
Query: 692 ETQ 700
TQ
Sbjct: 210 STQ 212
>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
peptidyl-prolyl cis-trans isomerase
Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 610
Score = 28.3 bits (60), Expect = 1.1
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +2
Query: 551 FYGSPGISSYSTPFITQRSPALSLGLTADQTKMAVGYGDSSIKVYDMET 697
++ +P Y F + LS L+ D+ G D S+KV+D+E+
Sbjct: 73 WHKTPNGVEYIKEFHAHNAMLLSAELSQDERLFITGADDKSLKVFDVES 121
>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
Dna2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1398
Score = 27.1 bits (57), Expect = 2.6
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = -2
Query: 475 VGYFDPVNCTVHTSSVANSFFDHAVFNGV 389
VG + P + T ++ + FF HA++ G+
Sbjct: 461 VGIYGPPTKAMVTGNILHDFFQHALYRGI 489
>SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 438
Score = 27.1 bits (57), Expect = 2.6
Identities = 8/36 (22%), Positives = 19/36 (52%)
Frame = +2
Query: 311 LIQMRHGSTGTVLCTLRNVQFPPKPVYAIEYSMVEE 418
++ M H ++ T+R+ P +P Y ++Y + +
Sbjct: 146 VLAMEHRDNSAIISTVRDPLHPEEPPYVVQYREISD 181
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 27.1 bits (57), Expect = 2.6
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = +2
Query: 26 KHMEEKNEV-LSEYIKNIKYHYKNEENPVIWYPLFHKTRLKEKKVYAWIQDNFAKFLKGT 202
K ++ K +V LS ++ ++ YK + P+I + E+ V +DNF FL G
Sbjct: 896 KKIKNKIQVKLSSILEMLRSRYKKFKKPIIDLNDIYIDESNERVVKGKSKDNFEYFLSG- 954
Query: 203 ANNIT 217
N +T
Sbjct: 955 -NTVT 958
>SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 307
Score = 26.2 bits (55), Expect = 4.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +1
Query: 418 KSLLRCLYGRCNLQDRNTQRCG 483
KSL+ + +CNLQD +CG
Sbjct: 267 KSLIDGVLQQCNLQDARASKCG 288
>SPBC713.05 |||WD repeat protein, human MAPK organizer 1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 614 LSLGLTADQTKMAVGYGDSSIKVYDMET 697
L L L D TK A GD I+V+D+ T
Sbjct: 60 LDLDLVYDSTKFASCGGDKFIQVWDVNT 87
>SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 615
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -2
Query: 454 NCTVHTSSVANSFFDHAVFNGVHWLGRKL 368
NC T AN + + + NG+ LGR +
Sbjct: 559 NCGAFTLEEANEYINLGILNGMFVLGRSI 587
>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
complex subunit Tpr1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1039
Score = 25.4 bits (53), Expect = 7.9
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = -2
Query: 430 VANSFFDHAVFNGVHWLGRKLH 365
+ NSF + +G +W+GR H
Sbjct: 316 IQNSFSSSLIADGYYWMGRAYH 337
>SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 25.4 bits (53), Expect = 7.9
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = +2
Query: 383 PVYAIEYSMVEERVCYAACMDGAIYRIEIPNVVAPIEEPPLFCIRADPA 529
P Y + +S EE ACM ++ +P + I+ PL I+ A
Sbjct: 304 PYYIVRFSTEEECSAINACMGRPVF--YVPTMANKIDPEPLKYIKGSDA 350
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +2
Query: 482 APIEEPPLFCIRADPALESFNMQFYGSPGISSYSTP 589
AP +P DPA ++ + SP +S STP
Sbjct: 248 APTNKPSTDINTTDPATQTTQVSASNSPALSGSSTP 283
>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 791
Score = 25.4 bits (53), Expect = 7.9
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +2
Query: 470 PNVVAPIEEPPLFCIRADPA-LESFNMQFYGSPGISSYSTPFITQRSPAL 616
PNV AP+ P F I + PA + + S S P T +SP++
Sbjct: 435 PNVAAPVFTPGKFTIPSKPAPVNASRPMMPQQSNNSEASIPSTTPQSPSV 484
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,931,006
Number of Sequences: 5004
Number of extensions: 62146
Number of successful extensions: 188
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -