Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11j17
         (701 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    31   0.014
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    30   0.024
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    29   0.056

>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 30.7 bits (66), Expect = 0.014
 Identities = 19/82 (23%), Positives = 35/82 (42%)
 Frame = +2

Query: 8   SSRLRYKHMEEKNEVLSEYIKNIKYHYKNEENPVIWYPLFHKTRLKEKKVYAWIQDNFAK 187
           +SR RY    E+ +  + Y    +Y    E +         + R KE+K+ + + +N+  
Sbjct: 34  TSRKRYSRSREREQ--NSYKNEKEYRKYRERSKERSRDKRERERSKERKIISSLSNNYIS 91

Query: 188 FLKGTANNITYNRWYFTENGYI 253
            +    NN  YN+  +    YI
Sbjct: 92  NISNYNNNNNYNKKLYYNINYI 113


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 29.9 bits (64), Expect = 0.024
 Identities = 19/82 (23%), Positives = 33/82 (40%)
 Frame = +2

Query: 8   SSRLRYKHMEEKNEVLSEYIKNIKYHYKNEENPVIWYPLFHKTRLKEKKVYAWIQDNFAK 187
           +SR RY    E+ +    Y     Y    E +         + R KE+K+ + + +N+  
Sbjct: 272 TSRKRYSRSREREQ--KSYKNENSYRKYRETSKERSRDKTERERSKERKIISSLSNNYIS 329

Query: 188 FLKGTANNITYNRWYFTENGYI 253
            +    NN  YN+  +    YI
Sbjct: 330 NISNYNNNNNYNKKLYYNINYI 351


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 28.7 bits (61), Expect = 0.056
 Identities = 18/82 (21%), Positives = 35/82 (42%)
 Frame = +2

Query: 8   SSRLRYKHMEEKNEVLSEYIKNIKYHYKNEENPVIWYPLFHKTRLKEKKVYAWIQDNFAK 187
           +SR RY    E+ +  + Y    +Y    E +         + R KE+K+ + + +N+  
Sbjct: 34  TSRKRYSRSREREQ--NSYKNEKEYRKYRERSKERSRDKRERERSKERKIISSLSNNYIS 91

Query: 188 FLKGTANNITYNRWYFTENGYI 253
            +    N+  YN+  +    YI
Sbjct: 92  NISNYNNDNNYNKKLYYNINYI 113


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,562
Number of Sequences: 438
Number of extensions: 4391
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)